Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105624g00001 ATGGCGGAAGAAAGATTCACCGGTGTGGTTCTATGGTTCAACAACAGCAAAGGCTTCGGATTCATCAAACCCGATAACGGTTCCGATGATGTCTTCGTTCATCAATCTTCCATCAGATCCGATGGATTCCGCACTCTTGTTGATGGCGATCTCGTCGAATTCGCCATCGCACCCAGCGACAACGACAAAACCAAAGCCGTCGATGTCACCGGTCCTAACGGCGCTCCTCTGCAATCCAAACAGGATTCCTACAACGGAGGCGGCGGCGGTCGTGGATTTAGAGGTGCTGATAGGCGTAATGGTGGCGGCGGTGGTGGTGGCTGTTACAACTGTGGTGATACTGGCCACATCGCTAGGGAATGCAACCGGATCAATAACTCTGGAGGTGGCGGTGGAAACGCAGGCTGTTATAACTGCGGTGACACTGGTCACATCGCTAGGGATTGCAACCGGAGCAATAACTCCGGCGGAGGTGGAGGCGGTGGTTGTTATACTTGCGGCGCGTTTGGACATATCGCTAGGGATTGCATGCGTGGAGGCAACATCGGCGGTGGAATTGACCGTGGCAGTGGAGGTGGCACTTCATGCTACAGAT 595 0.5412 MAEERFTGVVLWFNNSKGFGFIKPDNGSDDVFVHQSSIRSDGFRTLVDGDLVEFAIAPSDNDKTKAVDVTGPNGAPLQSKQDSYNGGGGGRGFRGADRRNGGGGGGGCYNCGDTGHIARECNRINNSGGGGGNAGCYNCGDTGHIARDCNRSNNSGGGGGGGCYTCGAFGHIARDCMRGGNIGGGIDRGSGGGTSCYR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105624g00001 198 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Trme105624g00001 198 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 SUPERFAMILY Retrovirus zinc finger-like domains 89 124 IPR036875 GO:0003676|GO:0008270
Trme105624g00001 198 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 SUPERFAMILY Retrovirus zinc finger-like domains 126 178 IPR036875 GO:0003676|GO:0008270
Trme105624g00001 198 Gene3D - 97 132 - -
Trme105624g00001 198 ProSiteProfiles Zinc finger CCHC-type profile. 108 121 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 SMART csp_8 7 72 IPR011129 GO:0003676
Trme105624g00001 198 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Trme105624g00001 198 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Trme105624g00001 198 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Trme105624g00001 198 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Trme105624g00001 198 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Trme105624g00001 198 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Trme105624g00001 198 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Trme105624g00001 198 Gene3D - 133 185 - -
Trme105624g00001 198 MobiDBLite consensus disorder prediction 72 98 - -
Trme105624g00001 198 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 Pfam Zinc knuckle 107 121 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 Pfam Zinc knuckle 135 149 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 ProSiteProfiles Zinc finger CCHC-type profile. 136 149 IPR001878 GO:0003676|GO:0008270
Trme105624g00001 198 PANTHER COLD SHOCK DOMAIN PROTEIN 2 153 197 - -
Trme105624g00001 198 Gene3D - 1 83 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105624g00001 Trme-Chr105624 8 602 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Trme105624g00001 CSD 2.6e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105624g00001 K09250 - tpra:123881414 293.508