Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105589g00001 ATGGGAGGTAAAAACGGTCAGATCTACATCGTAACAGATTCCTCCGACAAAGACCCAGCAAATCCAATTCCAGGAACACTCCGTCACGCCGTAATTCAAGANNNTNNNNNNNNNNTNNNNNNNNNNACCGACATGACAATAAATCTCCGTCATGAACTAATCTTCAACTCATTCAAAACCGTCGACGGCCGCGGCGCAAATGTTGAAATCACCGGTCACGGTTGCATAACACTCCAATACATCTCAAATATAATCATCCACAA 263 0.403 MGGKNGQIYIVTDSSDKDPANPIPGTLRHAVIQXXXXXXXXXTDMTINLRHELIFNSFKTVDGRGANVEITGHGCITLQYISNIIIH 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105589g00001 87 PANTHER PECTATE LYASE 18-RELATED 1 87 IPR045032 GO:0030570
Trme105589g00001 87 PRINTS Pollen allergen Amb family signature 52 68 IPR018082 -
Trme105589g00001 87 PRINTS Pollen allergen Amb family signature 16 41 IPR018082 -
Trme105589g00001 87 Gene3D - 1 87 IPR012334 -
Trme105589g00001 87 SUPERFAMILY Pectin lyase-like 2 87 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105589g00001 Trme-Chr105589 1 263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105589g00001 1 87 Polysaccharide Lyase AT3G54920 59.770 9.98e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105589g00001 K01728 - gmx:100789303 145.591