Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105580g00001 AAGACACGAGGAATGGGAGCGGCCCGCAAGTTGAGGATACAACGTATTAAGCAACGATGGGCAGATAAGCAATATAAAAAATCTCATTTAGGGAAAGAATGGAACAAGCCTTTTGCTGGATCATCTCATGCTAAGGGGATTGTTCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCCATTCGAAAATGTGCCCGAGTTCAACTCATTAAAAATGGGAAGAAGATAGCTGC 239 0.4268 KTRGMGAARKLRIQRIKQRWADKQYKKSHLGKEWNKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAA 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105580g00001 80 Gene3D - 23 80 IPR012340 -
Trme105580g00001 80 FunFam - 23 69 - -
Trme105580g00001 80 ProSitePatterns Ribosomal protein S12 signature. 57 64 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trme105580g00001 80 Pfam Ribosomal protein S12/S23 31 80 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trme105580g00001 80 SUPERFAMILY Nucleic acid-binding proteins 18 80 IPR012340 -
Trme105580g00001 80 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 80 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105580g00001 Trme-Chr105580 343 672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105580g00001 1 80 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 91.250 2.22e-47 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105580g00001 K02973 - ini:109163307 150.214