Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105520g00001 ATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCACCATATGTTTCAACTGAACCATCACTGAATGTGCATAAAATCTCTACTTCTGATCAATTTGTTATAGTTGCAAGTGATGGTTTATTCGACTTCTTCAGCAATGAGGAAGCAGTAAATCTCGTCGAGTCTTACATCTTGAGCAATCCTCATGGTGATCCAGCTAAATTTCTCATTGAAGAATTAGTAACAAAAGCAGCTGATTCTGCRGGTAGTTTCACCACGGAGGAGTTGATGAATGTTCCGGACGGGAGGAGGAGAAAGTATCACGATGATGTCACTGTAATGGTGATCATCCTTGGGATGAATAAGCGAACTTCAAAGGCGTCAATTTGCATCTAA 375 0.408 MGILRVRDLKSPPYVSTEPSLNVHKISTSDQFVIVASDGLFDFFSNEEAVNLVESYILSNPHGDPAKFLIEELVTKAADSAGSFTTEELMNVPDGRRRKYHDDVTVMVIILGMNKRTSKASICI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105520g00001 124 Gene3D - 1 120 IPR036457 -
Trme105520g00001 124 ProSiteProfiles PPM-type phosphatase domain profile. 1 111 IPR001932 -
Trme105520g00001 124 SUPERFAMILY PP2C-like 10 112 IPR036457 -
Trme105520g00001 124 Pfam Protein phosphatase 2C 11 79 IPR001932 -
Trme105520g00001 124 PANTHER PROTEIN PHOSPHATASE 9 109 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105520g00001 Trme-Chr105520 191 644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105520g00001 1 121 PP2C-type Phosphatase Gene Family AT3G16560 75.207 4.22e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105520g00001 - - tpra:123885607 238.039