Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105478g00001 ATGCCCAACGGATCGTTGGATAAGTTCATCTACAAAAATGGATCTCCTGACGCAATTTGTGATTTTGATTGGAACACATTGTTCCAAATTGCAATTGGCATTGCTAGAGGACTAGAGTACTTGCATCAAGGATGTAATTCAAGAATTCTACATCTTGATATCAAACCTCAAAACATTCTTTTGGATGAAAAATTTTGTCCTAAAATATCTGATTTTGGACTAGCTAAAATATGTCAAAAGAAGGATAGTATCGTGTCAATACTGGGGATCAGAGGTACTGCAGGATATATGGCGCCAGAAGTATTCAGTAGAACATTTGGCGGAGTTTCCTACAAATCCGATGTATACAGTTATGGCATGTTGATTAATGAAATGATCCGAGGAAGAAAGAACTATGACACCGGAGGATCATGTACTTCTGAAAAGTACTTTCCAGACTGGATTTATAAGGATCTCGAGCAAG 463 0.3758 MPNGSLDKFIYKNGSPDAICDFDWNTLFQIAIGIARGLEYLHQGCNSRILHLDIKPQNILLDEKFCPKISDFGLAKICQKKDSIVSILGIRGTAGYMAPEVFSRTFGGVSYKSDVYSYGMLINEMIRGRKNYDTGGSCTSEKYFPDWIYKDLEQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105478g00001 154 SMART serkin_6 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme105478g00001 154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Trme105478g00001 154 FunFam Protein kinase superfamily protein 1 77 - -
Trme105478g00001 154 Pfam Protein kinase domain 4 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme105478g00001 154 SUPERFAMILY Protein kinase-like (PK-like) 1 137 IPR011009 -
Trme105478g00001 154 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 153 IPR045874 GO:0004672
Trme105478g00001 154 Gene3D Transferase(Phosphotransferase) domain 1 1 154 - -
Trme105478g00001 154 ProSiteProfiles Protein kinase domain profile. 1 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105478g00001 Trme-Chr105478 174 636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105478g00001 1 154 Receptor kinase-like Gene Family AT4G18250 61.538 1.61e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme105478g00001 Pkinase 4.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105478g00001 - - mtr:11438961 293.123