Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10545g00001 ATTAAGCTACCATCTGGCTCAAAGAAGATTATTCCAAGTGGTTGCAGGGCTATGATCGGACAAGTTGCAGGTGGAGGAAGAACTGAGAAGCCACTTCTTAAGGCCGGTAATGCTTACCACAAATTTAGAGTGAAGAGGAATTGTTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAACATCCTCACGGAGGAGGTAACCACCAACATATTGGACATGCTAGTACTGTTAGGCGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCCGCTAAGAGAACTGGTCGTCTTAGGGGACAAGCTGCTGCAACTGCTGCTAAGGCTGATAATTGA 339 0.4749 IKLPSGSKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADN 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10545g00001 112 MobiDBLite consensus disorder prediction 59 112 - -
Trme10545g00001 112 SUPERFAMILY Translation proteins SH3-like domain 1 99 IPR008991 -
Trme10545g00001 112 ProSitePatterns Ribosomal protein L2 signature. 50 61 IPR022671 GO:0003735|GO:0005840|GO:0006412
Trme10545g00001 112 SMART Ribosomal_L2_C_2 1 84 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme10545g00001 112 FunFam 60S ribosomal protein L2 23 100 - -
Trme10545g00001 112 Gene3D Ribosomal protein L2, domain 3 23 101 IPR014726 -
Trme10545g00001 112 Pfam Ribosomal Proteins L2, C-terminal domain 1 80 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme10545g00001 112 PANTHER RIBOSOMAL PROTEIN L2 1 107 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10545g00001 Trme-Chr10545 943 1281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10545g00001 1 111 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 93.694 2.85e-73 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10545g00001 K02938 - thj:104819180 230.72