Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105456g00001 AACCTAGCAACCATTGAAAGTGAAAGCGACGAAGATGTAACCGAGTCTTCTTTTAGTAATGATGATATTGGTGATGCCGATTTTTCATTTAGTCAAGAGTTCGAAACCGATCTCCAGTTTCTTGAAGGTGAAGGAAGTAATATTGATGATGACGATGATGACTACGATGAAATGGAAGAAGATGAAATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTAGGAGATTTTATAGGAGAAGAAAAAAGAGGATTATCACCTAATGAAATTTCTTCTTGCTTATATCCTTATACTTGCAAAATTGCTGAAAGAAAAAGTGGAATTGATCGTTGTGTGATTTGTCAAATTGAATATGAAGAAGGTGAAGCCTTAGTTTCACTTCATTGTGATCATCCTTATCATACAGATTGTATAAGCAAATGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCTAACAAGGCTAAGAACACTTGA 501 0.3413 NLATIESESDEDVTESSFSNDDIGDADFSFSQEFETDLQFLEGEGSNIDDDDDDYDEMEEDEIDPDELSYEELIELGDFIGEEKRGLSPNEISSCLYPYTCKIAERKSGIDRCVICQIEYEEGEALVSLHCDHPYHTDCISKWLQIKKVCPICSNEVSTPNKAKNT 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105456g00001 166 MobiDBLite consensus disorder prediction 39 65 - -
Trme105456g00001 166 MobiDBLite consensus disorder prediction 1 26 - -
Trme105456g00001 166 SUPERFAMILY RING/U-box 112 160 - -
Trme105456g00001 166 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Trme105456g00001 166 SMART ring_2 113 153 IPR001841 -
Trme105456g00001 166 MobiDBLite consensus disorder prediction 44 65 - -
Trme105456g00001 166 FunFam E3 ubiquitin ligase BIG BROTHER-related 79 160 - -
Trme105456g00001 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 166 IPR013083 -
Trme105456g00001 166 Pfam Ring finger domain 112 153 IPR001841 -
Trme105456g00001 166 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 45 158 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105456g00001 60 157 C3H Transcription Factor Family AT3G63530 48.515 8.52e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105456g00001 K19045 - gmx:100526881 248.44