Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105449g00001 GCGCTTAAGGCTGGAGTTGTCAAGCATGGGGTGGGTAAATGGCGCACAATACTCAAGGATCCTGAGTTTAATTGTGTCTTATATATTCGCTCAAATGTTGATCTAAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACTTCTAGGGAGAAGGCTAAGGTATCAATCAGAAGGGCACATCATCAGGGATCAAGACATGATGACAACCCTATGGCTGTCACTCCTGTTACTCCAAGTGATGATGAANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNTTTTTTGTTGGTTTAA 357 0.3165 ALKAGVVKHGVGKWRTILKDPEFNCVLYIRSNVDLKDKWRNLSVMANGWTSREKAKVSIRRAHHQGSRHDDNPMAVTPVTPSDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLV 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105449g00001 118 CDD SANT_TRF 1 42 - -
Trme105449g00001 118 MobiDBLite consensus disorder prediction 61 92 - -
Trme105449g00001 118 PANTHER SINGLE MYB HISTONE 4 1 79 IPR044597 GO:0003691
Trme105449g00001 118 FunFam Telomere repeat-binding factor 1 1 44 - -
Trme105449g00001 118 Gene3D - 1 71 - -
Trme105449g00001 118 SUPERFAMILY Homeodomain-like 1 57 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105449g00001 Trme-Chr105449 1 483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105449g00001 1 85 Single Myb Histone (SMH) Gene Family AT1G49950 62.353 3.93e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105449g00001 K09422 - gmx:100780698 140.198