Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1053g00001 AAAGGTGGATATGGACACGTGTTTAAAGGTATCCTCCGTAACACCGAAGTTGCCATAAAAATGTTGCATCACCGGAGCGAACAAGGAACAGCGGAGTTTGAGCGTGAGGTGGATTTATCGGGTAAGCTAAAGCATCCCAATCTGGTCACTCTTGTTGGTGCCTGTCCAGATGCTAAAGCTCTTGTCTACGAATATCTACCCAATGGAAATCTTGAAGACCATCTAAATTGTATGAATAACACACCTGCATTATCATGGGAAATGCGGATGCGGATTGCTGCAGAACTCCGCTCCGCTCTCATCTATCTTCATAYATCTAAGCCTCACAGCATAGTGCATTCTGACGTGAAGCCCGCAAATATCCTTCTAGATGCAAATTTTGTCGCCAAACTTGGTGATTTTGGACTGTGTCGAACTTTATCAAACTATGACTATATAACTGATAATAATACACAGTTTTGGAGAACCGCACCAATAGGGACTTTTGAGTATATGGATCCGGAATTATTTTTGACCCGTGAACTCACTCCAATGTGTGATGTTTACGCATTTGGAATAGTATTGCTAAGATTGTTAACTGCGAGACCAGACTGGTGGATAACTCGTGAAGTCAGAGAAGGAAGGCTAGATTTGATATCATCATTAGATCCTTTGGCTGGAGACTGGCCATTTGTGCTGGTTGAGGAGTTGGGTTACTTGGCTTTGCGGTGTCTTCAGCCGAGAAGGAAGAATCGGCCGGAGCTTTGTTCGGATGTCTGGAGGATACTAGATGATTATTCTAGTGGTACAAACTCTAACACAGTAACCAAACTTGTCCATAAAAAGACCAGAATCAAGAGCCTCGTCAGGCTGGAAGGTGGCACTGGCATCCCTTCTCTTGTTGAATTACTGGAAGTTGACTATGCAACGGTACAAAGAGCCGCAGCTGGGGCCTTGCGAACACTGGCATTTAAAAATGCTGCAAATAAAAACATGATTGTTGAATGCGATGCGTTGCCCACTCTTGTATTGATGCTTGGATCAGGGGATCCTACAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTGGTCCGCTCTTCGCCTGAAATTAAGAAAGAGGTTCTTCTAGCTGGGGCTTTACAGCCAGTTATTCGCTTACTAAGTTCCTGCTGTTTGAGGAGCCAACGAGAAGCAGCTCTTTTAATCGGCCAATTTGCTGCAACAGATTCAGATTGCAGGATTCAAATTGCCCAGAGAGGGGCTATAAAACCCTTAATTGACATGCTTAAATCATCAGATTTACAGCTTCAGGAAATGTCAACTTTTGCCCTTGAGAGGTTGGCCCAGGACTTTCACAATCAAGCTGGTATTGCTTACAACGGAGGTATAGAGCTCCTAGTCAAGCTTCTTGGCACAAAGAATGCTTCTGTCCAACACAATGCAGTTTTTGCTCTTTATGCTCTTGCAGATAATGAGGACAATGTTGCGCTTATTATTAAGACTGGCGGTTTTCAAAAACTGCAGGATGGACATTTCAATGGTCATCCCACTCAAGAGTGTGCAACAAAGACCTTAAAAAGATTAGAAGAGAAGATGCAAGGGCGAGTACTGAAACACATGCTATATCTTATGCGCTCTGGGCGCTCTGGGAAGAAGGGTCTTCAAATACGTGTAGTACTTGCTCTTGCACATTTATGTTCCCCTGATGACCGTAAAACTATTTTCATTGACAATAACGGATTAGAATTGCTGGATCTTCTTCAATCTATAAACCAAAAGCAAAAGGGTGAAGCTTCAGCAGCGCTTCACGCAATGGCTTCCAAAGGAGCTGGTGCCTCTATTCTTGATCCTGCTCCTACATCACCAACTCCCCAGGTATTTTTCATTTAA 1872 0.4348 KGGYGHVFKGILRNTEVAIKMLHHRSEQGTAEFEREVDLSGKLKHPNLVTLVGACPDAKALVYEYLPNGNLEDHLNCMNNTPALSWEMRMRIAAELRSALIYLHXSKPHSIVHSDVKPANILLDANFVAKLGDFGLCRTLSNYDYITDNNTQFWRTAPIGTFEYMDPELFLTRELTPMCDVYAFGIVLLRLLTARPDWWITREVREGRLDLISSLDPLAGDWPFVLVEELGYLALRCLQPRRKNRPELCSDVWRILDDYSSGTNSNTVTKLVHKKTRIKSLVRLEGGTGIPSLVELLEVDYATVQRAAAGALRTLAFKNAANKNMIVECDALPTLVLMLGSGDPTIHYEAVGVIGNLVRSSPEIKKEVLLAGALQPVIRLLSSCCLRSQREAALLIGQFAATDSDCRIQIAQRGAIKPLIDMLKSSDLQLQEMSTFALERLAQDFHNQAGIAYNGGIELLVKLLGTKNASVQHNAVFALYALADNEDNVALIIKTGGFQKLQDGHFNGHPTQECATKTLKRLEEKMQGRVLKHMLYLMRSGRSGKKGLQIRVVLALAHLCSPDDRKTIFIDNNGLELLDLLQSINQKQKGEASAALHAMASKGAGASILDPAPTSPTPQVFFI 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1053g00001 623 SMART arm_5 444 484 IPR000225 GO:0005515
Trme1053g00001 623 SMART arm_5 275 317 IPR000225 GO:0005515
Trme1053g00001 623 SMART arm_5 319 359 IPR000225 GO:0005515
Trme1053g00001 623 SMART arm_5 403 443 IPR000225 GO:0005515
Trme1053g00001 623 SMART arm_5 361 401 IPR000225 GO:0005515
Trme1053g00001 623 SMART arm_5 562 601 IPR000225 GO:0005515
Trme1053g00001 623 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 265 621 IPR044282 -
Trme1053g00001 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515
Trme1053g00001 623 Gene3D Phosphorylase Kinase; domain 1 1 66 - -
Trme1053g00001 623 Gene3D Transferase(Phosphotransferase) domain 1 67 261 - -
Trme1053g00001 623 SUPERFAMILY ARM repeat 289 601 IPR016024 -
Trme1053g00001 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Trme1053g00001 623 SUPERFAMILY Protein kinase-like (PK-like) 1 247 IPR011009 -
Trme1053g00001 623 Gene3D - 262 609 IPR011989 -
Trme1053g00001 623 Pfam Armadillo/beta-catenin-like repeat 320 359 IPR000225 GO:0005515
Trme1053g00001 623 Pfam Protein kinase domain 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1053g00001 623 ProSiteProfiles Protein kinase domain profile. 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1053g00001 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 455 497 IPR000225 GO:0005515
Trme1053g00001 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 288 326 IPR000225 GO:0005515
Trme1053g00001 623 SMART serkin_6 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1053g00001 Trme-Chr1053 2 3335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1053g00001 1 278 U-box Gene Family AT2G45910 50.355 4.68e-90 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme1053g00001 Pkinase 8.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1053g00001 - - vvo:131612489 493.812