Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105377g00001 CCCATAGGTAATGCTGACAAAACTCAAAGTTTGAGTCCTCCAAACAATTTTAGTATTCATCAAGCTGAAGGTGCATTGGGGAAAGCAAGAGTTTCTGTTAGAGCTAGATCAGAAGAAGACATGGTCCCGGATGGAGGCCAATGGAGAAAGTATGGTCAAAAAATGGCGAAAGGGAACCCGTGTGCTCGATCTTATTATCGATGCAGCATGGCTGCTGGCTGCCCGGTTAGAAAACAG 237 0.4557 PIGNADKTQSLSPPNNFSIHQAEGALGKARVSVRARSEEDMVPDGGQWRKYGQKMAKGNPCARSYYRCSMAAGCPVRKQ 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105377g00001 79 ProSiteProfiles WRKY domain profile. 37 79 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme105377g00001 79 SMART WRKY_cls 42 79 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme105377g00001 79 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 21 79 IPR044810 GO:0003700
Trme105377g00001 79 SUPERFAMILY WRKY DNA-binding domain 35 79 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme105377g00001 79 Gene3D WRKY domain 29 79 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme105377g00001 79 Pfam WRKY DNA -binding domain 44 79 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105377g00001 Trme-Chr105377 2 321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105377g00001 1 79 WRKY Transcription Factor Family AT1G62300 61.728 6.29e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme105377g00001 WRKY 1.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105377g00001 - - tpra:123922147 153.68