Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105339g00001 ATGATGGATCATCGTTTTCTGGAGTTGGAAAAACAGCTTCTTGAAGACAATGATGAAGAAGGAGAACAAGACGCAGTTTCTGGGATTACAAACAGCGAATGGTCTGAAACAATTCAGAATTTGATTAGTTTCGAGAAAAACCCGACCCAGAAACCCGATTCATACTCACCCACTTCTTCAACAACATCACTCAACTCATGTTCTTCCTCTGTTGTTTCTCCTGCTTCTGGTTGTTCAAAGCAATTGTTAATGGAAGCTGCAACCGCAATTTCCGAAGGTAAAATGGAATCTGCTTCGGAGATCCTTAATCGTATGGCTCAGAATCCGAACCCAATAATGAATTCTGATCGTCGATTAATGGATTGCATGGTTTCAGCGTTGAAATCACGCGTGAATCATGTTGAAAATCCACC 413 0.4116 MMDHRFLELEKQLLEDNDEEGEQDAVSGITNSEWSETIQNLISFEKNPTQKPDSYSPTSSTTSLNSCSSSVVSPASGCSKQLLMEAATAISEGKMESASEILNRMAQNPNPIMNSDRRLMDCMVSALKSRVNHVENPP 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105339g00001 138 Pfam GRAS domain family 80 133 IPR005202 -
Trme105339g00001 138 MobiDBLite consensus disorder prediction 14 33 - -
Trme105339g00001 138 ProSiteProfiles GRAS family profile. 70 138 IPR005202 -
Trme105339g00001 138 MobiDBLite consensus disorder prediction 45 75 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105339g00001 8 131 GRAS Transcription Factor Family AT5G52510 50.806 1.79e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme105339g00001 GRAS 3.3e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105339g00001 - - tpra:123914170 241.891