Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105323g00001 TGGAAAGCAAGATCTACACATCTCAAAGACATCTTCACTGAGAATTTCAAAGAACCAGTTTCAGCCAGGGTTGTCTTTCAGACCGCTGATGGGAGATCTGCTGGGTATGGATTTGTTTCTTATCATACAAAGGAGGAAGCAGATGCTGCCGTTTCTGCTTTGGAAGGGAAGTGGTTCTGA 180 0.4444 WKARSTHLKDIFTENFKEPVSARVVFQTADGRSAGYGFVSYHTKEEADAAVSALEGKWF 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105323g00001 59 Gene3D - 1 59 IPR012677 -
Trme105323g00001 59 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 59 IPR000504 GO:0003723
Trme105323g00001 59 SUPERFAMILY RNA-binding domain, RBD 4 59 IPR035979 GO:0003676
Trme105323g00001 59 PANTHER OS02G0815200 PROTEIN 1 57 - -
Trme105323g00001 59 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 59 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105323g00001 Trme-Chr105323 1 297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105323g00001 20 59 Eukaryotic Initiation Factors Gene Family AT2G23350 45.000 7.27e-06 39.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105323g00001 - - vum:124843240 90.1225