Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105295g00001 GTTATGGCGTTAATTGCCTACTTAATGGAATTTAAAGGAAACTATGGCCCGCATCTTATAATAGTTCCAAATGCCGTTTTGGTTAACTGGAAGAGTGAATTGCATACATGGTTACCATCTGTGTCATGCATTTTTTATGTTGGAACAAAGGATCATCGGTCAAAATTGTTTTCTCAAGAGGTTATGGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGAGCAAAGCTTTCAAAAATTGATTGGAGGTATATCATAATTGATGAAGCTCAGAGAATGAAGGATAGAGAGTCAGTTTTAGCTCGTGATCTTGACAGATATCGGTGTCACAGACGCCTGCTTCTGACAGGAACACCTTTACAGGTCTGTTCTGTTCTGCTTTGA 402 0.3831 VMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGTKDHRSKLFSQEVMAMKFNVLVTTYEFIMYDRAKLSKIDWRYIIIDEAQRMKDRESVLARDLDRYRCHRRLLLTGTPLQVCSVLL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105295g00001 133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 127 IPR027417 -
Trme105295g00001 133 Pfam SNF2-related domain 2 127 IPR000330 GO:0005524|GO:0140658
Trme105295g00001 133 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 133 IPR014001 -
Trme105295g00001 133 PANTHER SNF2/RAD54 HELICASE FAMILY 1 127 - -
Trme105295g00001 133 Gene3D - 1 129 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105295g00001 Trme-Chr105295 96 664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105295g00001 16 127 RAD5 or RAD16-like Gene Family AT5G43530 36.207 1.56e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme105295g00001 SNF2_N 1.1e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105295g00001 K11647 - egt:105963832 250.751