Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105225g00001 ATGGATTCCCGCTCACCACCACCACAACCACCACAATCAACCATCATGGTGGGACCCACATCTTACGCTCCAACAAACACCTCCATGATCAGCCCTAATTCCTCCACCACCACCGCCACCAACCTTATGGCACCCGCCACCGCTCGATTTCCTTTCTCCTCTTCGCAACAATCGGAGCCATTCTCCGTCACTCACGACGCTCCTCCTTCCTCTCCGTCTACTCTTGCTAAGAAAAAACGTGGCCGTCCGAGGAAATACTCCCCTGATGGTAACATTGCTCTTGGTTTGGCTCCTACTCGTGTTTCTTCTCCTGCCGCTGCTACTTCCGCCTCCGCCGGTGATTCCGGTAACGCTGATGCTCCTCCCAAGAAACATAGAGGAAGACCTCCTGGTTCTGGGAAGAAGCAGTTAGATGCGCTTG 421 0.5416 MDSRSPPPQPPQSTIMVGPTSYAPTNTSMISPNSSTTTATNLMAPATARFPFSSSQQSEPFSVTHDAPPSSPSTLAKKKRGRPRKYSPDGNIALGLAPTRVSSPAAATSASAGDSGNADAPPKKHRGRPPGSGKKQLDAL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105225g00001 140 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Trme105225g00001 140 SMART AT_hook_2 77 89 IPR017956 GO:0003677
Trme105225g00001 140 MobiDBLite consensus disorder prediction 1 140 - -
Trme105225g00001 140 MobiDBLite consensus disorder prediction 15 71 - -
Trme105225g00001 140 PRINTS AT-hook-like domain signature 77 87 IPR017956 GO:0003677
Trme105225g00001 140 PRINTS AT-hook-like domain signature 121 132 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105225g00001 Trme-Chr105225 226 646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105225g00001 76 140 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 59.722 2.29e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105225g00001 - - gmx:100789717 120.168