Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105208g00001 ATGGGATACCTTGCACCTGAATATCTTCAATACGGGAAAGCTACTGATAAAACCAATGTTTTCAGCTATGGAGTGGTTGTGCTTGAAGTGGCTTGTGGGAAGATAATTGAAGCTGTTGATAAGAGGTTAAATGGTGAATTTGAGGAAAAGGAAATGAGGAAGGTTTTGATGTTAGGGTTGAGTTGTGCTAATCCTGATAGTGCTGAGAGACCTACTAYGAGAAGAGTATTGCAGATTCTTAACAATGAAGCTGTTCCATTTACTGTTCCAAAAGTGAAGCCATGCCTTACATTCTCATCTGATTTGCCATTGAMTATTGATGAGATTGTTTCTGATGTTGATGATGGTGAGTGTGAAGAGTTCAAGACTAGCCAGTCTATGTGTGAGATTAAAATTGAATGA 402 0.3831 MGYLAPEYLQYGKATDKTNVFSYGVVVLEVACGKIIEAVDKRLNGEFEEKEMRKVLMLGLSCANPDSAERPTXRRVLQILNNEAVPFTVPKVKPCLTFSSDLPLXIDEIVSDVDDGECEEFKTSQSMCEIKIE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105208g00001 133 Pfam Protein tyrosine and serine/threonine kinase 3 78 IPR001245 GO:0004672|GO:0006468
Trme105208g00001 133 Gene3D Transferase(Phosphotransferase) domain 1 1 99 - -
Trme105208g00001 133 PANTHER - 1 90 - -
Trme105208g00001 133 SUPERFAMILY Protein kinase-like (PK-like) 2 89 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105208g00001 Trme-Chr105208 175 651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105208g00001 1 117 Receptor kinase-like Gene Family AT5G55830 53.472 4.70e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trme105208g00001 PK_Tyr_Ser-Thr 3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105208g00001 - - adu:107496163 198.364