Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105000g00001 AATAGCCTTATTTGCACTGAGGAAGATAGCAGTGTTTTTGATGACGCTGAATATGGTGGCGGTGTTAATTCGATGGAGGAGGTGTACGAGGATTTGTGGCATCCTAGGTTCAACGATCAGAGAAACCAACAACAACGATTTGGTGTTGTTCCTGATGAGTTGCCATTGCAGAGTGAAGAGTGTTTGGTTCTGATGTTGGAAAAAGAATTTCAACAATGGCCTGGTGCTGATTACTTGAATAGGTTGCAATCTGGGGTTTTGGATGTTGCAGCAAGAGAGGAAGCCATCGATTGGATTCAGAAGGTTCAAGCACATTTCGGTTTCGGTCCTCTATGTGCTTATATATCCATTAATTATATGGACCGTTTCCTTGTTGCATATGAATTACCGAAGGGAAGGGCTTGGACAATGCAATTGTTGGCTATAG 427 0.4262 NSLICTEEDSSVFDDAEYGGGVNSMEEVYEDLWHPRFNDQRNQQQRFGVVPDELPLQSEECLVLMLEKEFQQWPGADYLNRLQSGVLDVAAREEAIDWIQKVQAHFGFGPLCAYISINYMDRFLVAYELPKGRAWTMQLLAI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105000g00001 142 Gene3D - 76 142 - -
Trme105000g00001 142 SUPERFAMILY Cyclin-like 56 142 IPR036915 -
Trme105000g00001 142 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Trme105000g00001 142 Pfam Cyclin, N-terminal domain 64 141 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105000g00001 Trme-Chr105000 1 674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105000g00001 25 142 Core Cell Cycle Gene Families AT5G10440 42.857 6.54e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105000g00001 K18810 - pvy:116138527 176.407