Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10498g00001 ATGCTTTCTAATCATGGAACTGAGACTTCAAATCAAAAGGGTCACAAGAAAAATCTGGTTTCTTCAAAATGGTTGTCAAAAAGCTTAGATTTGGATGAATATGATCCAAATGAATTGCTTGTTGTGGCTACAGATGGAACTGGGAACTTTAGCACAATCACTGATGCTATAAACTTTGCTCCAAATAATAGCATGATTAGGACAGTGATTTATGTTAAAGAAGGGATTTATGATGAAAATGTTGAAATACCAAGTTATAAAACTAACATTGTAATGCTTGGTGATGGAAGTGATGCTACTGTCATCAGTGGTAACAGAAGTGTTGTTGATGGATGGACCACTTTCAGATCTGCAACATTAG 361 0.3518 MLSNHGTETSNQKGHKKNLVSSKWLSKSLDLDEYDPNELLVVATDGTGNFSTITDAINFAPNNSMIRTVIYVKEGIYDENVEIPSYKTNIVMLGDGSDATVISGNRSVVDGWTTFRSATL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10498g00001 120 ProSitePatterns Pectinesterase signature 1. 64 83 IPR018040 -
Trme10498g00001 120 Pfam Pectinesterase 40 120 IPR000070 GO:0030599|GO:0042545
Trme10498g00001 120 PANTHER PECTINESTERASE 23 120 - -
Trme10498g00001 120 Gene3D - 36 120 IPR012334 -
Trme10498g00001 120 SUPERFAMILY Pectin lyase-like 38 119 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10498g00001 Trme-Chr10498 947 1307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10498g00001 23 120 Carbohydrate Esterase AT2G26440 71.717 2.31e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10498g00001 - - psat:127136348 192.586