Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme104984g00001 TCTTGGGAACTACAAGAGTTCACTAATTACTTCAATGATGAAGATATTAACTTCAACAACAGCTCACAATCACAAACGAAGGAATTCAACTCTACGTTATCCTTCCTAAACAATGAGTCATTACAAGTCTCATCCAATACAACTAATACACAAGTGATCAATGAGACACAAACAACATCGCCACCACCACCACCGCAGACGATTAAAGAAAGTAAGAAAAGTTCTTTTAGAGGAGTAAGAGCAAGGCCATGGGGGAAATTCGCGGCAGAGATAAGGGACTCAACAAGAAAAGGGGCAAGAGTATGGCTTGGAACATTCGACACCGCCGAAGCAGCTGCTTTAGCTTACGACCAAGCTGCTTTTTCAACAAGAGGTTCATCGGCAGTGTTGAATTTTCCAGAGGCATTAGTTAAAGCATCACTCAAAGAAATGGCTAAAAATTCYAAGCCTTTGGAAGAAGGTACTTCCCCAGTGTTGGCAATCAAGAACAAACACACCAGGAGAAAAAGATCCAATAAGGTTATTCAAAAGAAAATCAAAAGTGATTATCATAGTGATCAAATTAAGACTCAGATAAAGGACAATACTAATTCTCAAAATGTGTTAGTGCTTGAGGATTTGGGTGCTGAATATTTGGAGCAACTATTGAGTTTGACTTCTTAA 663 0.3891 SWELQEFTNYFNDEDINFNNSSQSQTKEFNSTLSFLNNESLQVSSNTTNTQVINETQTTSPPPPPQTIKESKKSSFRGVRARPWGKFAAEIRDSTRKGARVWLGTFDTAEAAALAYDQAAFSTRGSSAVLNFPEALVKASLKEMAKNSKPLEEGTSPVLAIKNKHTRRKRSNKVIQKKIKSDYHSDQIKTQIKDNTNSQNVLVLEDLGAEYLEQLLSLTS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme104984g00001 220 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Trme104984g00001 220 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Trme104984g00001 220 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Trme104984g00001 220 FunFam Ethylene-responsive transcription factor 2 74 134 - -
Trme104984g00001 220 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Trme104984g00001 220 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Trme104984g00001 220 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Trme104984g00001 220 PANTHER DNA-BINDING DOMAIN 32 216 IPR044808 GO:0003700|GO:0009873
Trme104984g00001 220 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Trme104984g00001 220 CDD AP2 74 135 IPR001471 GO:0003700|GO:0006355
Trme104984g00001 220 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme104984g00001 Trme-Chr104984 3 665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme104984g00001 71 216 AP2-EREBP Transcription Factor Family AT3G23240 57.047 7.51e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme104984g00001 AP2 7.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme104984g00001 K14516 - gmx:100780775 207.608