Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10492g00001 ATGCAGAAAATGATTAATGGAATGACTGTTAGCCGCTGGGCGTGCATAAATTTTTCACGAGGCGTGCAGGATAGTGTTGCTCGTACTTTTTGTAACGAGCTTGCGCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCGGAGCCTGTTATCCCGATCTACAATGCAAAACCTGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCATCAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGTAATATTGCCGGACAACAATGGTTCTCTCTATGGCGATCTCAAGCGTATTTGCGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTTAAGATTACTAAGCAGTACTTAGCCAATGTGTCTTTGAAGATCAACGTTAAGATGGGTGGTAGAAACACCGTTCTTGTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCGACAATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGGGAAGACTCCAGCCCATCAATAGCAGCTGTAGTAGCGTCGCAAGATTGGCCTGAAGTTACAAAGTATGCAGGCTTAGTTTGTGCTCAACCTCAAAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATCCG 692 0.4249 MQKMINGMTVSRWACINFSRGVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10492g00001 231 Pfam Piwi domain 84 216 IPR003165 GO:0003676
Trme10492g00001 231 ProSiteProfiles Piwi domain profile. 83 231 IPR003165 GO:0003676
Trme10492g00001 231 Pfam Mid domain of argonaute 3 69 IPR032473 -
Trme10492g00001 231 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 217 - -
Trme10492g00001 231 Gene3D - 1 149 - -
Trme10492g00001 231 FunFam Argonaute 10 1 146 - -
Trme10492g00001 231 SUPERFAMILY Ribonuclease H-like 75 216 IPR012337 -
Trme10492g00001 231 Gene3D - 152 229 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10492g00001 Trme-Chr10492 21 1179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10492g00001 2 231 Eukaryotic Initiation Factors Gene Family AT5G43810 90.435 6.90e-152 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10492g00001 K11593 - gmx:100819073 446.817