Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme104855g00001 AATCTTAAAATCAAAAAGCCTTTCAATAATAATAACAATGTAACTACAACCGAGATTCACTTCAGAGGCGTTAGAAAGAGACCATGGGGCCGTTACGCCGCCGAGATTCGCGATCCCGGCAAGAAAAGCCGCGTTTGGCTCGGCACCTTTGACACAGCCGAAGAAGCTGCTAAAGCTTACGACGCCGCCGCTCGTCAGTTCCGCGGCCCGAAAGCCAAGACCAATTTCCCTCCACCGTCTGATGTCGTTAAAGAGGATAGCCCAAGCCAAAGCAGCACCGTTGAGTCATCCACACCTGAGCGTGAAATCACGCGCCCTCGTGAAGTTGCCGCCGCCGTTGCCGCAGGTGGTGTCATGGATCGGTTCCCGTTTCTCTCGATCCAGCAACAAATCATGCCGTTTTCCGGCGTTGGTGCTGTAAATGGAATGGTAACTGCTGTGAACCCGGTTTTCTTTTTTGATCCAGCGGCTCGAGCTGAGTTTATGAACCAAAGGTTTTCTACCCGGTTTGAACCGGGTCCGGTTGAGTTTAACATCGGATTTGGTGGTGGTGTCCAGAGCGACTCGGATTCGTCTTCCGTTGTTGATTGTCAGCCAAAGAGAGCTCTCAATCTTGATCTTAACTTAGCTCCACCAATGGATGTTTAA 648 0.5077 NLKIKKPFNNNNNVTTTEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDAAARQFRGPKAKTNFPPPSDVVKEDSPSQSSTVESSTPEREITRPREVAAAVAAGGVMDRFPFLSIQQQIMPFSGVGAVNGMVTAVNPVFFFDPAARAEFMNQRFSTRFEPGPVEFNIGFGGGVQSDSDSSSVVDCQPKRALNLDLNLAPPMDV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme104855g00001 215 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Trme104855g00001 215 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Trme104855g00001 215 MobiDBLite consensus disorder prediction 69 105 - -
Trme104855g00001 215 MobiDBLite consensus disorder prediction 84 99 - -
Trme104855g00001 215 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Trme104855g00001 215 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Trme104855g00001 215 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Trme104855g00001 215 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Trme104855g00001 215 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Trme104855g00001 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 156 - -
Trme104855g00001 215 FunFam Ethylene-responsive transcription factor 2 20 78 - -
Trme104855g00001 215 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme104855g00001 Trme-Chr104855 2 649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme104855g00001 18 213 AP2-EREBP Transcription Factor Family AT5G44210 47.317 2.26e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme104855g00001 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme104855g00001 K09286 - gmx:100801924 214.542