Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme104681g00001 ATGACAGGGAAAGGGAAACTCAACGTGGTTGATTCGCCTGCATGTGGTTACCGGAGTGTCGATTGTTTTAAGAAATTGGAACAAATCGGCGAAGGAACCCATGGTCAGGTTTACATGGCTCGAGAAATCAAAACTGGTGAAATTGTTGCTCTCAAGAAAATACGATTGGACAATAAGAGAGAAGGG 186 0.4355 MTGKGKLNVVDSPACGYRSVDCFKKLEQIGEGTHGQVYMAREIKTGEIVALKKIRLDNKREG 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme104681g00001 62 Gene3D Phosphorylase Kinase; domain 1 10 62 - -
Trme104681g00001 62 ProSiteProfiles Protein kinase domain profile. 23 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme104681g00001 62 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Trme104681g00001 62 SUPERFAMILY Protein kinase-like (PK-like) 17 58 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme104681g00001 Trme-Chr104681 116 382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme104681g00001 1 62 Core Cell Cycle Gene Families AT5G10270 73.016 4.35e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme104681g00001 None None None