Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1044934g00001 ATGATTGTTTCAACTCCAGTCGATGTGTCGGAAAAATGGAAGCCTTACAGGGGAGTTAGACGGCGGCCGTGGGGGAAATTTACGGCGGAGATACGTGACGTGGCTAAAAATGGGGAGCGG 120 0.525 MIVSTPVDVSEKWKPYRGVRRRPWGKFTAEIRDVAKNGER 40
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1044934g00001 40 PANTHER DNA-BINDING DOMAIN 10 40 IPR044808 GO:0003700|GO:0009873
Trme1044934g00001 40 ProSiteProfiles AP2/ERF domain profile. 15 40 IPR001471 GO:0003700|GO:0006355
Trme1044934g00001 40 SUPERFAMILY DNA-binding domain 15 39 IPR016177 GO:0003677
Trme1044934g00001 40 Gene3D AP2/ERF domain 14 40 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1044934g00001 Trme-Chr1044934 56 175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1044934g00001 12 40 AP2-EREBP Transcription Factor Family AT5G47220 79.310 3.36e-10 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1044934g00001 K09286 K14516 qsa:O6P43_034053 57.3806