Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme104464g00001 TTTGAGAAGCCGTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCCAAGGTCTAGATGTGATTCAGCAGGCTCAATCAGGAACTGGAAAGACAGCCACCTTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGAATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTGGCACAGCAAATTGAGAAGGTTATGAGAGCACTTGGTGATTACCTTGGTGTTAAAGTTCATGCTTGTGTTGGTGGCACTAGTGTTCGTGAGGATCAGCGTATTCTCCAAACTGGTGTTCATACTGTTGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGAAGACAGTCTCTTCGGGCAGATTGCATAAAAATGTTTGTTTTGGATGAGGCTGATGAGATGCTTTCACGTGGTTTCAAGGACCAG 429 0.4615 FEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGILQQLDYELVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQTGVHTVVGTPGRVFDMLRRQSLRADCIKMFVLDEADEMLSRGFKDQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme104464g00001 143 Pfam DEAD/DEAH box helicase 6 143 IPR011545 GO:0003676|GO:0005524
Trme104464g00001 143 PANTHER RNA HELICASE 1 143 - -
Trme104464g00001 143 SMART ultradead3 1 143 IPR014001 -
Trme104464g00001 143 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 128 136 IPR000629 -
Trme104464g00001 143 Gene3D - 1 143 IPR027417 -
Trme104464g00001 143 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 12 143 IPR014001 -
Trme104464g00001 143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 142 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme104464g00001 Trme-Chr104464 30 458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme104464g00001 1 143 Eukaryotic Initiation Factors Gene Family AT3G13920 93.706 1.64e-94 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme104464g00001 K03257 - gmx:100817948 276.559