Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme104261g00001 ATGATATACACAGCAATTGAAGCTTTGAAAGAGCAAAACGGTTCAAGCAAAAGAGCAATAGCGAAATACATAGAACATGTTTACAAAGACCAACTTCCACCTTCACACACAACCTTGTTGACTCATCACTTGAAGCGTTTGAAATCTGATGGTTTACTTTCTATGGTTAAAAATTCATACATAATCCCTAGATCTACTCCACCTCCACCTTCTTCTTCACTTACTCAACCTTCAAGACGACGTGGCAGACCCAGAAAACCCCAAACCCAACCTCAATCTCAACCACTTCATCCTATTGTTGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNGCCGCCCCCGTTTCTGACGGGAGTAAAAGAGGTCGTGGGCGTCCTAAGAAAGGGACGGGCCCAACCCCAAGCCCAAGCCCAGTACCGACTCAAGGTGGTGTTGGTGTTGGTGGTGTGGTTCCACCAACACCTTCTCGAGGTAGAGGACGTCCGCCTGGGTCTAAAGCTAAATCAAAGAGGAGGCCTGGACGTCCACCGAAGGTGCAGCCGGAGACTACAGCTGCTGTTTCTAGTGGTGGTTC 635 0.4126 MIYTAIEALKEQNGSSKRAIAKYIEHVYKDQLPPSHTTLLTHHLKRLKSDGLLSMVKNSYIIPRSTPPPPSSSLTQPSRRRGRPRKPQTQPQSQPLHPIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPVSDGSKRGRGRPKKGTGPTPSPSPVPTQGGVGVGGVVPPTPSRGRGRPPGSKAKSKRRPGRPPKVQPETTAAVSSGGS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme104261g00001 212 SMART AT_hook_2 78 90 IPR017956 GO:0003677
Trme104261g00001 212 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Trme104261g00001 212 SMART AT_hook_2 176 188 IPR017956 GO:0003677
Trme104261g00001 212 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Trme104261g00001 212 Coils Coil 100 100 - -
Trme104261g00001 212 PRINTS AT-hook-like domain signature 174 185 IPR017956 GO:0003677
Trme104261g00001 212 PRINTS AT-hook-like domain signature 188 198 IPR017956 GO:0003677
Trme104261g00001 212 PRINTS AT-hook-like domain signature 140 150 IPR017956 GO:0003677
Trme104261g00001 212 Gene3D - 1 72 IPR036388 -
Trme104261g00001 212 MobiDBLite consensus disorder prediction 59 212 - -
Trme104261g00001 212 FunFam Histone H1.2 1 72 - -
Trme104261g00001 212 SUPERFAMILY "Winged helix" DNA-binding domain 1 69 IPR036390 -
Trme104261g00001 212 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 64 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme104261g00001 212 PANTHER HISTONE H1 1 201 - -
Trme104261g00001 212 Pfam linker histone H1 and H5 family 1 58 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trme104261g00001 212 SMART h15plus2 1 59 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme104261g00001 1 67 Single Myb Histone (SMH) Gene Family AT1G49950 46.269 5.08e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme104261g00001 - - mtr:25496745 123.635