Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10421g00001 ATGGTAGTTGAGATGAAAATCTACGTAATGGACTTTCCTGGAGAGACGATCCCCCTAACGGTTGAGAGTTCAGACACGATAGTCATAGTGAAGGAAAAGATTTTTGAGAAGTTAAGGATCCCGGTGCACCAACAAGTTTTGTTCCTAGCCGGTAAGCATCTATATGACAACAGGACCCTTGCCGATTACAACATCCAAGAGAAGTCAACCCTTAACCTCGCTCCCCGCTTGATGGCAGACTAG 243 0.4568 MVVEMKIYVMDFPGETIPLTVESSDTIVIVKEKIFEKLRIPVHQQVLFLAGKHLYDNRTLADYNIQEKSTLNLAPRLMAD 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10421g00001 80 Gene3D - 2 80 - -
Trme10421g00001 80 SMART ubq_7 5 76 IPR000626 GO:0005515
Trme10421g00001 80 FunFam 2'-5'-oligoadenylate synthase-like protein 2 4 77 - -
Trme10421g00001 80 ProSiteProfiles Ubiquitin domain profile. 5 80 IPR000626 GO:0005515
Trme10421g00001 80 SUPERFAMILY Ubiquitin-like 5 77 IPR029071 -
Trme10421g00001 80 PANTHER UBIQUITIN 5 77 - -
Trme10421g00001 80 PRINTS Ubiquitin signature 57 78 IPR019956 -
Trme10421g00001 80 PRINTS Ubiquitin signature 15 35 IPR019956 -
Trme10421g00001 80 PRINTS Ubiquitin signature 36 56 IPR019956 -
Trme10421g00001 80 Pfam Ubiquitin family 9 74 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10421g00001 Trme-Chr10421 741 1110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10421g00001 5 79 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 58.667 1.99e-21 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10421g00001 - K02927 mtr:25493109 80.1073