Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10420g00001 CTCTTCAACTGTTCCATAGAGGAGAATATAGCTTATGGATTTGATGGCAAAATTAACGACGCTGATATTGAAAATGCAGTTAAAATGGCCAACGCGCATGAATTTATATCAAATTTCCCAGAAAAATACAAGACCTTTGTTGGAGAGCGAGGCATAAGGCTTTCAGGAGAACAGAAACAGAGAATGGCACTTTTGCCATTACAAGTGGTATCACTCGCCCGTGGTTCAGGGACCCAACCCGGCTCACTAAATCACTTTCTCAAACCGGCAATTCCAAAATTCGAAGGTTTCTACGATCACTGGGCAATGTTGNTGGAGAATTTACTCCGATCAAAGGAGTATTGGTCACTGATAGAGGTTGGTGTCACGGTTGCTCCACCAAATGCAACGGCAGAGCAGATTCGGGTGGCACATGCTAGCAAGATCACGGATATGAAGGTAAAGAACTACTTGTTTCAATCTATAGATCGTTCGATTTTAGAAACAATTCTTTCCAAAGAAACCTCGAAAGAAATTTGGGATTCAATGAGATTGAAGTATCAAGGATCCACAAAGGTGAAGCGTGCACAGCTTCAAGCTTTACGCAGAGAGTTTGAGATTCTTGAAATGGGGGACAATGAAACAGTAGATGAATACTTTGCAAGAACTATGGCAATTGCAAACAAGATGACTGCTCATGGTGAAAGAATGCAACCAGTCACCATTGTAGAGAAAATTTTGCGATCTATGCCAGAGAAATACAACTATGTTGTGTGCTCCATAGAAGAGTCAAATGATGTGACAACTCTTTCCATTGATGAACTTCAAAGTAGCTTGATTGGGACGAGGAAGAAGTTCATCAAGGGGAGTGGCAGAGGAAGAGTCAATAAAGAAATTGTGGAGTACTGTTATAAATGTCACAAACTAGGACACTACAAGCATGAGTGTCCGACTTGGGAAGAAAATACAAAGTATGCTGAGTTTGACTGTGAAGAAGAGATGCTTCTAATGGTCAAAACTGACTGTGATGAATTGGAAAATGAAAGATGGTTCTTGGATTCTGGTTGCAGCAACCATATGGTGGGAAACAAGAATTGGTTATATGAATTTGATGAAAGCTACAGAGACTCTGTGAAACTTGGAGATGATTCAAAGATGAGTGTCATGGGAAAAGGAAATGCCTAA 1164 0.4055 LFNCSIEENIAYGFDGKINDADIENAVKMANAHEFISNFPEKYKTFVGERGIRLSGEQKQRMALLPLQVVSLARGSGTQPGSLNHFLKPAIPKFEGFYDHWAMLXENLLRSKEYWSLIEVGVTVAPPNATAEQIRVAHASKITDMKVKNYLFQSIDRSILETILSKETSKEIWDSMRLKYQGSTKVKRAQLQALRREFEILEMGDNETVDEYFARTMAIANKMTAHGERMQPVTIVEKILRSMPEKYNYVVCSIEESNDVTTLSIDELQSSLIGTRKKFIKGSGRGRVNKEIVEYCYKCHKLGHYKHECPTWEENTKYAEFDCEEEMLLMVKTDCDELENERWFLDSGCSNHMVGNKNWLYEFDESYRDSVKLGDDSKMSVMGKGNA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10420g00001 387 ProSiteProfiles Zinc finger CCHC-type profile. 296 310 IPR001878 GO:0003676|GO:0008270
Trme10420g00001 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 64 IPR027417 -
Trme10420g00001 387 Pfam gag-polypeptide of LTR copia-type 143 276 - -
Trme10420g00001 387 SUPERFAMILY Retrovirus zinc finger-like domains 295 315 IPR036875 GO:0003676|GO:0008270
Trme10420g00001 387 Gene3D - 1 64 IPR027417 -
Trme10420g00001 387 PANTHER OS04G0629600 PROTEIN 98 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10420g00001 Trme-Chr10420 2 1558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10420g00001 1 64 Calmodulin-binding Proteins AT2G36910 56.250 4.12e-15 75.5