Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme104179g00001 ATGTCATCAAACTCTGACCAGCTTCTTCATGGCCAGCTAATGGAAACTGCTCCTGTCCGAATTCCCTTGCCATCTGATATGACGGAAGAACCAATATATGTGAATTCAAAGCAGTACCATGCTATTCTTAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACATAATAAACTCATCAAGGATCGTAAACCATATCTTCATGAGTCTCGCCATGTACATGCATTAAAGAGAGCTAGAGGTGCTGGTGGCCGCTTTCTCAATGCTAAAAAGCTCAAAGAATCAAAGCAAGCTTCACCAAACCATGGCCAAAATGTTTCCACCAGCTATACTTGTTTAAATTTGAATGGAAATATGTCAGAATCTAAAATTCATGATCAAGTTGAAAACTACAGAGATGGTGCTTCCGCTTCTGATGTCACATATGCATCAAATAAGAATGAAATGTTCCAACAGCAACAAGAGTTAGAATTCAGGTTATGCAGTTACCCTTCTTCTCAGACAGGAAGGAACATGCAGGATTATACAGCTGACAAGAGTGTTGGT 543 0.4033 MSSNSDQLLHGQLMETAPVRIPLPSDMTEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLKESKQASPNHGQNVSTSYTCLNLNGNMSESKIHDQVENYRDGASASDVTYASNKNEMFQQQQELEFRLCSYPSSQTGRNMQDYTADKSVG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme104179g00001 181 ProSitePatterns NF-YA/HAP2 subunit signature. 33 53 IPR018362 GO:0003677|GO:0016602
Trme104179g00001 181 ProSiteProfiles NF-YA/HAP2 family profile. 28 88 IPR001289 GO:0003700|GO:0006355
Trme104179g00001 181 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 30 85 IPR001289 GO:0003700|GO:0006355
Trme104179g00001 181 Gene3D - 28 89 - -
Trme104179g00001 181 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 156 IPR001289 GO:0003700|GO:0006355
Trme104179g00001 181 SMART cbf3 27 88 IPR001289 GO:0003700|GO:0006355
Trme104179g00001 181 PRINTS CCAAT-binding transcription factor subunit B signature 31 53 IPR001289 GO:0003700|GO:0006355
Trme104179g00001 181 PRINTS CCAAT-binding transcription factor subunit B signature 62 85 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme104179g00001 Trme-Chr104179 1 629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme104179g00001 19 171 CCAAT-HAP2 Transcription Factor Family AT1G17590 52.174 6.44e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme104179g00001 CBFB_NFYA 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme104179g00001 K08064 - gmx:100500765 209.534