Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme104034g00001 GGATGTGATGCATCAGTATTGTTAGACGACACAGCAAATTTCACAGGTGAAAAGAATTCATTCCCAAATGCAAACTCTCTAAGGGGTTTTGAGGTAATTGATGACATCAAATCTCAATTGGAGACTATGTGTCCCAATGTTGTCTCTTGTGCTGACATCTTAGCCCTTGCTGCCAGGGACTCTGTTGCTGAGCTTGGTGGACAAAGATGGAATGTACCATTAGGCAGAAGAGATTCGTTAACAGCAAGCTTAGATCAAGCAAATTCTGACTTACCTGCTCCCTTTTTGGATCTTGATGGCCTTATCGCTGGATTCCAAAAGAAAAATTTCACAGCCGAAGAAATGGTTACATTATCAGGTAATTCAATCATTAATTCCCTTAAGTTACCGCATCAAACATGGGCGAGCCAAGGCCCGGTTAGCTTAGTCACT 432 0.4213 GCDASVLLDDTANFTGEKNSFPNANSLRGFEVIDDIKSQLETMCPNVVSCADILALAARDSVAELGGQRWNVPLGRRDSLTASLDQANSDLPAPFLDLDGLIAGFQKKNFTAEEMVTLSGNSIINSLKLPHQTWASQGPVSLVT 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme104034g00001 144 Gene3D - 1 104 - -
Trme104034g00001 144 SUPERFAMILY Heme-dependent peroxidases 1 120 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 PANTHER PEROXIDASE 72-RELATED 1 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 ProSiteProfiles Plant heme peroxidase family profile. 1 124 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 PRINTS Plant peroxidase signature 28 41 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 PRINTS Plant peroxidase signature 66 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 PRINTS Plant peroxidase signature 47 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 PRINTS Plant peroxidase signature 113 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 PRINTS Haem peroxidase superfamily signature 48 65 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 PRINTS Haem peroxidase superfamily signature 66 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 PRINTS Haem peroxidase superfamily signature 114 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme104034g00001 144 Pfam Peroxidase 1 121 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme104034g00001 Trme-Chr104034 118 677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme104034g00001 1 124 Peroxidase AT5G05340 59.677 1.92e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme104034g00001 K00430 - gmx:100802244 201.445