Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103978g00001 ATGAGTAGTAAGAATTCAATGGGGAAAAGCAACATTTTCTCATCATCAATGGGATTAGGAAGGATTTTCTCCTTTGCTGAAATACAAGAAGCAACAAAGAATTTTGACTCCAAAAACATCATTGGTGTTGGTGGATTTGGTAATGTTTATTTAGGTGTGATTGATGAAGGGACTCAAGTTGCTGTCAAGAGAGGAAATCCACAATCAGAACAAGGTATCAATGAATTCCAAACTGAAATCCAAATGTTGTCTAAGCTTAGACATAGACATTTGGTTTCTATGATTGGATATTGTGATGAGAATGACGAAATGATTCTTGTTTATGAGTACATGCCTAATGGTCATTTGAGGGATCATCTTTATGGAAAGAACATGCCTTCACTTTCTTGGAAACAAAGGTTAGAGATCTGCATTGGATCGGCGAGAGGTCTTCATTACCTTCACACTGGCACGGCGCAAGGTATCATTCATCGCGATGTTAAGACAACAAACATTTTACTTGATGAGAATTTCACAGCTAAGGTATCCGATTTTGGACTTTCGAAAGATGCGCCTATGGGACAAGGTCATGTTAGTACCGCGGTGAAAGGTAGTTTTGGTTATCTTGACCCTGAGTACTTCAGGAGACAACAATTGAC 638 0.3871 MSSKNSMGKSNIFSSSMGLGRIFSFAEIQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSMIGYCDENDEMILVYEYMPNGHLRDHLYGKNMPSLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103978g00001 213 PANTHER OS07G0166700 PROTEIN 21 213 IPR045272 GO:0004714|GO:0006468
Trme103978g00001 213 FunFam Os07g0541700 protein 111 197 - -
Trme103978g00001 213 Gene3D Transferase(Phosphotransferase) domain 1 111 213 - -
Trme103978g00001 213 ProSiteProfiles Protein kinase domain profile. 35 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme103978g00001 213 ProSitePatterns Protein kinases ATP-binding region signature. 41 63 IPR017441 GO:0005524
Trme103978g00001 213 FunFam receptor-like protein kinase FERONIA 1 110 - -
Trme103978g00001 213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Trme103978g00001 213 Pfam Protein tyrosine and serine/threonine kinase 38 212 IPR001245 GO:0004672|GO:0006468
Trme103978g00001 213 SUPERFAMILY Protein kinase-like (PK-like) 9 210 IPR011009 -
Trme103978g00001 213 Gene3D Phosphorylase Kinase; domain 1 2 110 - -
Trme103978g00001 213 SMART serkin_6 35 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103978g00001 Trme-Chr103978 40 677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103978g00001 1 213 Receptor kinase-like Gene Family AT2G21480 79.812 1.22e-123 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme103978g00001 PK_Tyr_Ser-Thr 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103978g00001 - - tpra:123893803 433.721