Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103962g00001 TGGTCCAAGATTGCTCGTAGGCTTCCCGGAAGAACAGACAATGAAATCAAGAACCATTGGAGAACTCATTTACAAAAGAGAGTACAAGTTCAGCAAGAAGGTGAGTTCATGTATAAAGTAGAAAGTGTAGCACATGATTTCAACAAGAAAAGCATAGATGTGGTTTCTAACAGTGAGGGAGAGACTAAGGCAAGCTCAGTAGATAGTTTTCCTTTATCAGAATGGGGAATGGGGAATTCACCTTATGAAAATAGGATATTTGATTGGATAGTAGAATTGCAAAATGGATATAGTGACAAGGAAAAGGAATTAGGACGAGATTGTAAATCAACACATGAATATAATCCCCAACAAGAATATGATACATGGGATTATTCAGGTATTCTGTGGGATTTATGA 399 0.3684 WSKIARRLPGRTDNEIKNHWRTHLQKRVQVQQEGEFMYKVESVAHDFNKKSIDVVSNSEGETKASSVDSFPLSEWGMGNSPYENRIFDWIVELQNGYSDKEKELGRDCKSTHEYNPQQEYDTWDYSGILWDL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103962g00001 132 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 28 IPR017930 -
Trme103962g00001 132 Gene3D - 1 53 - -
Trme103962g00001 132 ProSiteProfiles Myb-like domain profile. 1 24 IPR001005 -
Trme103962g00001 132 Pfam Myb-like DNA-binding domain 1 24 IPR001005 -
Trme103962g00001 132 SUPERFAMILY Homeodomain-like 1 30 IPR009057 -
Trme103962g00001 132 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 56 - -
Trme103962g00001 132 CDD SANT 1 24 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103962g00001 Trme-Chr103962 133 621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103962g00001 1 99 MYB Transcription Factor Family AT3G53200 40.351 4.52e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme103962g00001 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103962g00001 K09422 - gmx:100783472 156.377