Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10387g00001 ATGTCTAAGCGAATATCCATTTTAGATGATGGGGACAGAAAGCTCGAGCACAAAATGGACGAGAAGTTAGAGTCGAGACCTGACAAAGAACGAAAAGTAATACCACCAACCTCTACATCTAACGTTGAAGATTTATTTGCAGTGAGGTTTGGCATTCGCCCCAAGTCCACTATCAAATCCTTGGAGATTGGTGAACATTCGCCTTCATCACAGAATGATGCTATTGAACTTTTATCTCAGAGCGCGGCTAATGAACATTTATCCCAAAACGCCACTGATAAACCTTTATCTAAGCAGGAAATGAGGAAATTCATTTGTCATTACTGTGACAAGAAGTTCTTTTCTATCCGAGCACTTGGAGGACACCAAAACGCTCATAAGCGCGAGCGTGTCTCCATAAAAATGGAAAAACAAATGAGAGAAGAGGAAATTATCTCAACCCTGAGATTTATACTTGGTCATCAACCATACCCTTATCCACTTTCAATCCCTATTCACTATCAAGGGCATTCTAATTTAGTTTCTTTCAATGAAACACCTTATCGAAAACGCCGGAAGAACCCGGACAAAGCACAAGATTGTTGTGATGCTGGTGCGGTCTTCTTCTCAATCAAATCCCCCGACCTATTTCAAGACCCACG 641 0.4134 MSKRISILDDGDRKLEHKMDEKLESRPDKERKVIPPTSTSNVEDLFAVRFGIRPKSTIKSLEIGEHSPSSQNDAIELLSQSAANEHLSQNATDKPLSKQEMRKFICHYCDKKFFSIRALGGHQNAHKRERVSIKMEKQMREEEIISTLRFILGHQPYPYPLSIPIHYQGHSNLVSFNETPYRKRRKNPDKAQDCCDAGAVFFSIKSPDLFQDPR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10387g00001 214 SUPERFAMILY beta-beta-alpha zinc fingers 102 131 IPR036236 -
Trme10387g00001 214 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Trme10387g00001 214 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Trme10387g00001 214 MobiDBLite consensus disorder prediction 1 33 - -
Trme10387g00001 214 MobiDBLite consensus disorder prediction 1 38 - -
Trme10387g00001 214 Gene3D Classic Zinc Finger 79 151 - -
Trme10387g00001 214 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 65 162 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10387g00001 Trme-Chr10387 187 1517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10387g00001 102 174 C2H2 Transcription Factor Family AT1G24625 45.205 1.08e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme10387g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10387g00001 - - tpra:123891784 162.155