Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103773g00001 ATGCAGTATCTTCCTCCAAAGTTGAATCATATTATGTCAAACTTGATTGATAAGAAAATCAATCTCGAGGATTCAGCGGGTGGACGAACGGCGGTAACAATATCAGAAGTTGACGGTTCTTTTGCTTTTAAGGAAGGATGGGATGTTTTCTCAAAGGAGCATGGGCTTGAAATTGGAGATATTGTGGTATTCAATTGCATTAACAAGTTGAATTTTGATGTCAAGATCTATGATGAATCTGTGTGTGAAAGACTAGATTTTTCTAAAAAAAGAAATGGGAGAAAGAGAGATAGAAGTGGCCATATATATCAAAATGATGATCTAGCTGTTTTTAACGAAGATCCTATGCTTGAAGAAGTGTTGGGTACAGGGGATACCTCATATGCATC 389 0.3676 MQYLPPKLNHIMSNLIDKKINLEDSAGGRTAVTISEVDGSFAFKEGWDVFSKEHGLEIGDIVVFNCINKLNFDVKIYDESVCERLDFSKKRNGRKRDRSGHIYQNDDLAVFNEDPMLEEVLGTGDTSYAS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103773g00001 130 SUPERFAMILY DNA-binding pseudobarrel domain 3 82 IPR015300 -
Trme103773g00001 130 Pfam B3 DNA binding domain 13 78 IPR003340 GO:0003677
Trme103773g00001 130 Gene3D - 2 82 IPR015300 -
Trme103773g00001 130 PANTHER B3 DOMAIN-CONTAINING 13 91 - -
Trme103773g00001 130 ProSiteProfiles B3 DNA-binding domain profile. 1 80 IPR003340 GO:0003677
Trme103773g00001 130 CDD B3_DNA 3 78 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103773g00001 2 83 B3 DNA Binding Superfamily AT3G18960 26.829 2.11e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme103773g00001 B3 7.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103773g00001 - - tpra:123897020 228.409