Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103762g00001 GTAAATGGTAGAGGGTTTATAGCACGCGATATTTCATTTAAGAACACAGCTGGCCCTGAGAAGCACCAAGCAGTGGCATTAAGATCAGATTCCGACCTCTCTGTATTTTATCGGGTTGGGATATTCGGTTATCAAGATAGCCTATATCCCCACGCTATGCGTCAATTCTACAGAGAGTGCAGAATTGCTGGTACAGTGGATTTCATTTTTGGAGATGCCACAGCCGTGTTCCAGAATTGCCAAATACTAGCCAAGAAAGGAAGTCCTGAACAAAAGAACACTATTACTGCTCAAGGAAGAAAAGACYCGAATCAACCAACCGGYTTCTCCTTCCAATTTTGCAACATTTCAGCAGACTCTGACCTTCTACCATCGGCTGGAACCATCCAAACATACCTAGGTAGACCTTGGAAGACTTATTCGCGAACAATTTTCATGCAATCCTACTTTAGTAACATAATAAGTCCTGCAGGGTGGTTAGAGATGAACGGAAAGTTTGCTTTGGACACATTGACTTACG 520 0.4288 VNGRGFIARDISFKNTAGPEKHQAVALRSDSDLSVFYRVGIFGYQDSLYPHAMRQFYRECRIAGTVDFIFGDATAVFQNCQILAKKGSPEQKNTITAQGRKDXNQPTGFSFQFCNISADSDLLPSAGTIQTYLGRPWKTYSRTIFMQSYFSNIISPAGWLEMNGKFALDTLTY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103762g00001 173 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
Trme103762g00001 173 PANTHER PECTINESTERASE 1 173 - -
Trme103762g00001 173 SUPERFAMILY Pectin lyase-like 1 173 IPR011050 -
Trme103762g00001 173 Gene3D - 1 173 IPR012334 -
Trme103762g00001 173 Pfam Pectinesterase 1 173 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103762g00001 Trme-Chr103762 14 533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103762g00001 1 173 Carbohydrate Esterase AT4G33220 73.410 3.18e-94 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103762g00001 K01051 - gmx:100814987 294.664