Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10369g00001 ATGGATTCACAACAACTTTATAGTTACAGCATGACTACAGGATTACCTTACATGCAATCTTTTCCAACTATTCCATCACTACAAAATGGTTTGCTTGGATCCTTGAAAGTTGGCTTCGGAAACTCACCTGATTCGCCGTTTTCCTCTCATTTTGATTCTGATACTCTTTCTGCATTTAGTGACAGCCACGAGCATTACAATTCCGGCGAAATCCTATCTGGTATAAGCTCTTCTTATAACTCATCACTGGAAGCCAACCATTATCTGCATAGATCGGTTTCATCGGTCGACAGTCTCAAAGAAAGTTTGCAATTATATTCTGCTAGAAATTCTTCTCTACCAACTAACCAGAAAATCAGACACGCCTTGTTGGAACTAGAAAATGCGCTGATGGCCCCTGATGATAACGAAGTTACGACATCTAATTCTTCGTTGGGTGATAGCATCAGGGAGACGGCATCCGGTCCGAGATATAGATCATGGAGCCATGAGAACCAAGGGTCACAATATATTCAAAGTCAGCCATCACATGTTACCAACAACANNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCGAAAGTTGGAGGAGGAATCATCTCTACAAGAGTTTCCATCGGGCGATTTAAAGCAATTACTGATTGCATGCGCCAAAGCCATGGCTGAGAACAACACCCAAGATTTTGACCGATTGATAGAAAGGGCTAGAAATGCTGTCTCTATCAATGGAGAGCCAATCCAGAGGCTTGGTGCTTATATGGTAGAAGGGCTTGTTGCAAGGAAGGAAGCGTCAGGGAATAGCATCTATCACGCTCTTAAGTGCCGTGAGCCTGAAGGCGAAGAGTTACTCACATACATGCAACTGCTTTTCGAAATCTGTCCCTACTTAAAATTCGGTTACATGGCTGCAAATGGAGCCATTGCCGAAGCTTGCAGGAATGAGGATCGCATACACATCATAGATTTTCAGATTGCTCAAGGAACTCAATGGATGACACTTCTTCAAGCTCTTGCTGCAAGACCTGGTGGGGCTCCCCACGTGCGGATCACAGGAATCGACGACCCCGTCTCTAAATATGCACGCGGTGATGGATTAGAAGTAGTCGGGAAAAGATTGGCCTTGATGTCCAAGAAATTCAACATCCCGGTTGAGTTTCATGGTATTCCTGTTTTCGGTCCCGACGTTACAAGAGACATGCTTGATATCAGAGTCGGAGAAGCTTTGGCTGTGAATTTTCCTTTGCAACTCCATCACACAGCTGATGAGAGTGTTGATGTGAACAATCCAAGAGATGGACTTTTAAGATTGGTAAAATCTCTTGCTCCAAAAGTGGTCACTCTTGTGGAGCAAGAATCAAACACAAACACAACACCTTTCTTCAACAG 1391 0.4263 MDSQQLYSYSMTTGLPYMQSFPTIPSLQNGLLGSLKVGFGNSPDSPFSSHFDSDTLSAFSDSHEHYNSGEILSGISSSYNSSLEANHYLHRSVSSVDSLKESLQLYSARNSSLPTNQKIRHALLELENALMAPDDNEVTTSNSSLGDSIRETASGPRYRSWSHENQGSQYIQSQPSHVTNNXXXXXXXXXXXXXRKLEEESSLQEFPSGDLKQLLIACAKAMAENNTQDFDRLIERARNAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALKCREPEGEELLTYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLALMSKKFNIPVEFHGIPVFGPDVTRDMLDIRVGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLAPKVVTLVEQESNTNTTPFFN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10369g00001 463 MobiDBLite consensus disorder prediction 135 162 - -
Trme10369g00001 463 Pfam GRAS domain family 211 463 IPR005202 -
Trme10369g00001 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 462 IPR005202 -
Trme10369g00001 463 Coils Coil 195 203 - -
Trme10369g00001 463 Coils Coil 180 181 - -
Trme10369g00001 463 ProSiteProfiles GRAS family profile. 202 463 IPR005202 -
Trme10369g00001 463 MobiDBLite consensus disorder prediction 135 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10369g00001 Trme-Chr10369 31 1421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10369g00001 202 462 GRAS Transcription Factor Family AT1G50600 59.770 3.52e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme10369g00001 GRAS 2.6e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10369g00001 - - adu:107462432 659.062