Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103652g00001 ATGGCTGCACCAGCTGCTGAAGAAGATGATGATGATCTTGACCTCTTTGGTGATGAAACAGAAGAGGATAAGAAGGCAGCAGAGGAAAGAGAGGCTTCTAAGAAGCCCGCCAAGAAGAAAGAAAGTGGAAAATCTTCCATTCTGCTCGATGTTAAGCCTTGGGATGACGAGACTGACATGAAGAAGCTCGAAGAGGCTGTTCGCAGCGTTGAGATTGAAGGTTTAACCTGGGGAGCAT 238 0.4706 MAAPAAEEDDDDLDLFGDETEEDKKAAEEREASKKPAKKKESGKSSILLDVKPWDDETDMKKLEEAVRSVEIEGLTWGA 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103652g00001 79 MobiDBLite consensus disorder prediction 1 53 - -
Trme103652g00001 79 Gene3D - 37 79 IPR014717 -
Trme103652g00001 79 Pfam EF-1 guanine nucleotide exchange domain 46 78 IPR014038 GO:0003746|GO:0006414
Trme103652g00001 79 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 9 17 IPR001326 GO:0003746|GO:0005853|GO:0006414
Trme103652g00001 79 FunFam Elongation factor 1-beta 1 like 38 79 - -
Trme103652g00001 79 MobiDBLite consensus disorder prediction 1 18 - -
Trme103652g00001 79 SUPERFAMILY eEF-1beta-like 41 78 IPR036219 -
Trme103652g00001 79 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 5 79 - -
Trme103652g00001 79 MobiDBLite consensus disorder prediction 19 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103652g00001 Trme-Chr103652 27 656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103652g00001 15 79 Eukaryotic Initiation Factors Gene Family AT5G12110 80.303 1.91e-25 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103652g00001 K03232 - dcr:108224136 94.3597