Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103517g00001 ATGTTGAATTTGCCTCATCTTAGTTACCGTGCACCTGATTCTGTTGCATCGTTTTTGAACGGAGCAAAAGCGTTGAATCCAAAGCTTGTAACGTTGGTAGAAGAAGAGGTTGGATCTGTTGTTGGTGGGTTTGTGGAAAGGTTCATGGACTCGCTTCATCATTACTCAGCGGTGTTTGATTCATTGGAGGCTGGGTTTCCGATGCAGAATCGGGCCCGGGCTTTGGTGGAGCGGGTATTTTTTGGGCCAAGGATTGCGGGCTCGTTGGGCCGTATTTATAGAACAGGTGGAGAAGAAGAGAGAAAATCGTGGGGGGAGTGGTTAGGTGCGGCAGGGTTTAGGGGAGTTCCGGTGAGCTTTGCGAATCATTGTCAAGCGAAGCTTTTGTTGGGTCTTTTTAATGACGGGTATAGAGTTGAAGAGGTGGGTGTAGGTAGTAATAAGTTGGTGTTGGATTGGAAATCACGGCGTTTGCTTTCTGCTTCACTTTGGACTTGTTCTTCTTCAGATTCTGATTTATAG 522 0.4674 MLNLPHLSYRAPDSVASFLNGAKALNPKLVTLVEEEVGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRTGGEEERKSWGEWLGAAGFRGVPVSFANHCQAKLLLGLFNDGYRVEEVGVGSNKLVLDWKSRRLLSASLWTCSSSDSDL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103517g00001 173 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 161 IPR005202 -
Trme103517g00001 173 ProSiteProfiles GRAS family profile. 1 165 IPR005202 -
Trme103517g00001 173 Pfam GRAS domain family 9 165 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103517g00001 Trme-Chr103517 23 544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103517g00001 6 168 GRAS Transcription Factor Family AT5G17490 35.882 7.98e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme103517g00001 GRAS 8.8e-38 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103517g00001 - - tpra:123896871 328.561