Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103505g00001 ATGCTGTTCTGGGCAGTGGACAACCCTGCGCCTGCTAATTATTTATTGATTTCGGGTGATCGAGATTTCTCTAATGCCCTCCATCAACTGCGAATGAGGAGGTATAATATTCTTCTTGCGCAACCTCAAAATGCATCTGCACCCCTAGTTGCAGCTGCTAAGAGTGTATGGCTTTGGACTAGTCTCTTAGCTGGAGGAGCTCCATTAGAGTCACACCAACTGGGTAATAGTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNACACAGCAACAGGGAGGTCCCTATTCCGATGTTCATGCAGGAAATTCAAAATTCCAAAATGGAGGAAGGGGATTTGATTCTAGATATCAGGGGCGACCAACTTGGAGAAACCCGAGTCAACCAAATGGACCGAAAGCCATGAATCCACCCCCAGTTGGACCTCAAGATAACCGTAATAACGTAAACAATTATCGACCTGGCAACTATAATCCAAATGTTCCTCCAAGCGGACCCGCCACAAATTTTGTCCGCCCCAATTCTGATCAGTTATGGAGCAATAATGGTAATCAACAGGGAAATCATCAAAATG 595 0.4118 MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQNASAPLVAAAKSVWLWTSLLAGGAPLESHQLGNSXXXXXXXXXXXXXXXXXXTQQQGGPYSDVHAGNSKFQNGGRGFDSRYQGRPTWRNPSQPNGPKAMNPPPVGPQDNRNNVNNYRPGNYNPNVPPSGPATNFVRPNSDQLWSNNGNQQGNHQN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103505g00001 198 MobiDBLite consensus disorder prediction 97 118 - -
Trme103505g00001 198 PANTHER LIMKAIN B LKAP 1 137 IPR024768 GO:0005777|GO:0010468
Trme103505g00001 198 Coils Coil 96 99 - -
Trme103505g00001 198 MobiDBLite consensus disorder prediction 148 198 - -
Trme103505g00001 198 Pfam NYN domain 1 54 IPR021139 GO:0004540
Trme103505g00001 198 MobiDBLite consensus disorder prediction 91 198 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103505g00001 1 71 C2H2 Transcription Factor Family AT5G61190 81.690 1.07e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103505g00001 - - gmx:100794608 271.937