Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103488g00001 ATTACAAAGAGGGAAGCAAAGGGAAATTGGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCTCAAATGGTGCTTATTTTGTACCATCTGGTTATGGAAGTTGTGCACCAAATTATACACCTTCTCAATCTTTTGTAGCTGTTCCAGCTTATATGGTGCCTGCTATAACTCTCAATGCAGGTCCATTGAGTTGTTTTGTTGGGAGAGCATGTTAA 219 0.3973 ITKREAKGNWKSWKWRSSKDAFSNGAYFVPSGYGSCAPNYTPSQSFVAVPAYMVPAITLNAGPLSCFVGRAC 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103488g00001 72 PRINTS Pollen allergen Amb family signature 43 66 IPR018082 -
Trme103488g00001 72 PRINTS Pollen allergen Amb family signature 13 37 IPR018082 -
Trme103488g00001 72 PANTHER PECTATE LYASE 18-RELATED 2 69 IPR045032 GO:0030570
Trme103488g00001 72 SUPERFAMILY Pectin lyase-like 8 71 IPR011050 -
Trme103488g00001 72 Gene3D - 1 65 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103488g00001 Trme-Chr103488 450 668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103488g00001 1 66 Polysaccharide Lyase AT4G22080 57.576 3.53e-24 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103488g00001 K01728 - gmx:100807483 132.494