Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103423g00001 ATGGATGGAAGTTCATTCCATTTGATAGGAGCTCCAATCTCTTCGGATCAGAATTCACAACAGCACAAGAGAAAATGTTCTGCCAGAGGCGATGAGGGAAGTCTGAAATGTGGTAGCAGTTCAAAATGCCATTGCTCAAAGAAGAGGAAGCATAGAGTGAAGAGATCGATTAAGGTGCCTGCAATCAGCAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTATGGGCAGAAACCGATCAAGGGCTCTCCTCACCCTAG 272 0.4522 MDGSSFHLIGAPISSDQNSQQHKRKCSARGDEGSLKCGSSSKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHP 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103423g00001 90 SUPERFAMILY WRKY DNA-binding domain 68 90 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme103423g00001 90 Pfam WRKY DNA -binding domain 72 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme103423g00001 90 Gene3D WRKY domain 49 90 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme103423g00001 90 MobiDBLite consensus disorder prediction 1 54 - -
Trme103423g00001 90 MobiDBLite consensus disorder prediction 68 90 - -
Trme103423g00001 90 ProSiteProfiles WRKY domain profile. 65 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme103423g00001 90 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 90 IPR044810 GO:0003700
Trme103423g00001 90 Pfam Plant zinc cluster domain 23 68 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103423g00001 Trme-Chr103423 238 610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103423g00001 4 90 WRKY Transcription Factor Family AT2G30590 78.409 2.27e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme103423g00001 Plant_zn_clust 4.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103423g00001 - - tpra:123924038 159.458