Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10323g00001 ATGAATGCAACTTCAAGCAACATGAAAATGGTTCCTGTGGCAAGTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTGTAAATGCAATGCCACCTAGTCGTGCTTCAACTTCAGGTGTGAGATTATCAGATGGTTTACAGGGGATACAATCCAAACCTTCTATAAGTCTGCATAAAGTGGAAAGTGTGACAAGATCCTCAGTTCCGTCCAATATGGATGGTCAATTGTTTATTGATACTAGAAATGAGAGCCATGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCCTATCTTGAAAGAATCCATCGACCTATATCCGGCAAATACACATGATAAGAAGAGAATTAGCCCTACAGAAGTTGAAAATACTGAGGAATCAAACCATCGTAGCACCTCCAAGAAAAAGAAGAAAACAAGTGCTGATGATGCCAGTGGCCCTAAGAGTTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGTGCTGGACTCTTCTGTGGCGACGATTGTGCTTGCGAAAGCTGTGGTAATAGAGTAGAATTTCAGGAGACAGTTGTTGAGACAAAGCATCATATTGAATCTCGTAATCCACAGGCATTTGCTCCCAAGATTGTACTGTGTGCGGCTGATGTTCCACCAAATAATATGGAAGATGTGAATATGACAACACCGGCATCGGCGAGGCACAAAAGAGGTTGCAATTGCAAAAGTTTTGCTGTATCCGCTAATAGATTTCTTTTTGAAAATATTTGTCATAAGGCTAACGTTGGATGCTCGAGTGGATGTCGATGTGATGGATGTATGAATGCGTTTGGCAAGAGAGAAG 859 0.4086 MNATSSNMKMVPVASSKPPGIGLHLNSIVNAMPPSRASTSGVRLSDGLQGIQSKPSISLHKVESVTRSSVPSNMDGQLFIDTRNESHETDASVVADSFISESPILKESIDLYPANTHDKKRISPTEVENTEESNHRSTSKKKKKTSADDASGPKSCNCKKSKCLKLYCDCFGAGLFCGDDCACESCGNRVEFQETVVETKHHIESRNPQAFAPKIVLCAADVPPNNMEDVNMTTPASARHKRGCNCKSFAVSANRFLFENICHKANVGCSSGCRCDGCMNAFGKRE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10323g00001 286 ProSiteProfiles CRC domain profile. 152 283 IPR005172 -
Trme10323g00001 286 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 4 286 IPR044522 GO:0003700
Trme10323g00001 286 MobiDBLite consensus disorder prediction 115 149 - -
Trme10323g00001 286 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 154 189 IPR005172 -
Trme10323g00001 286 SMART CXC_2 239 284 IPR033467 -
Trme10323g00001 286 SMART CXC_2 151 192 IPR033467 -
Trme10323g00001 286 MobiDBLite consensus disorder prediction 115 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10323g00001 Trme-Chr10323 487 1678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10323g00001 19 286 CPP Transcription Factor Family AT3G22760 35.821 5.70e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trme10323g00001 TCR 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10323g00001 K21776 - gmx:547664 249.21