Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103167g00001 GAAATTGTGAGGGATGTGAAGGAGAAATTGGCTTATATTGCTATTGATTATGAGCAGGAGTTGGAAACTGCCAAGACTAGCTCAGCTGTTGAGAAGACCTATGAGTTACCTGACGGGCAGGTGATCACGATCGGTGCTGAAAGGTTCCGATGCCCTGAAGTTTTGTTCCAGCCATCCATGATAGGGATGGAATCTCCTGGTATCCATGAGACGACGTTTAACTCGATCATGAAGTGTGACGTTGACATTAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTTCGACAATGTTCCCTGGTATTGCTGATAGGATGAGTAAGGAGATTACCGCATTGGCACCTAGTAGCATGAAAATCAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTGGCATCCCTCAGCACTTTCCAACAGTTGAGTCATTTTAATTTTCCTTGTGCAGATGTGGATTTCAAAGGCAGAATATGA 498 0.4458 EIVRDVKEKLAYIAIDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQLSHFNFPCADVDFKGRI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103167g00001 165 SUPERFAMILY Actin-like ATPase domain 1 150 IPR043129 -
Trme103167g00001 165 FunFam Actin, alpha skeletal muscle 1 65 - -
Trme103167g00001 165 Pfam Actin 1 149 IPR004000 -
Trme103167g00001 165 PANTHER ACTIN 2 148 IPR004000 -
Trme103167g00001 165 SMART actin_3 1 154 IPR004000 -
Trme103167g00001 165 Gene3D Actin; Chain A, domain 4 2 65 - -
Trme103167g00001 165 FunFam Major actin 51 132 - -
Trme103167g00001 165 Gene3D - 133 149 - -
Trme103167g00001 165 Gene3D - 66 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103167g00001 Trme-Chr103167 1 655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103167g00001 1 149 Cytoskeleton Gene Families AT5G09810 93.289 3.73e-101 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103167g00001 K10355 - gmx:100777705 290.426