Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10311g00001 ATGTTAAGTCTACTTCACCATCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGTCATTAGGATCCTTGGAAGACCACTTGCATGATTTATCTCCTAGCAAGAAACGACTTGACTGGAACATGCGGATGAAAATAGCCGCCGGGGCTGCAAAGGGATTGGAGTATCTACACGACAAAGCTAATCCTCCGGTCATATACCGAGATTTGAAATGCTCCAACATTTTGCTTGGCGAAGGGTATCACCCCAAGTTATCTGATTTTGGCTTGGCCAAACTTGGCCCGGTCGGAGAAAACACCCATGTATCRACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACCGGTCAACTTACTCTCAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTCGAAATAATTACAGGAAGGAAAGCTATTGACAATTCGAAATCTGCGGCAGAGCAGAATCTTGTTGCATGGGCTAGACCGTTGTTCAAAGATCGAAGGAAATTTTCGCAAATGGCTGATCCTATGCTTCAAGGTCAGTATCCTTCGAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAAGAACAAGCTAATATGCGTCCGGTTATAGCTGATGTTGTCACAGCTTTGTCTTACCTTGCTTCGCAAAGACATGATCACAATACTCAGACAGTCCAAAACTCTCGCCTCTCTCCTGGTACTCCCTCTAGAGCCCGGAGGGGGCGATAA 780 0.4474 MLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLHDLSPSKKRLDWNMRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAAEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRHDHNTQTVQNSRLSPGTPSRARRGR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10311g00001 259 MobiDBLite consensus disorder prediction 235 259 - -
Trme10311g00001 259 Gene3D Transferase(Phosphotransferase) domain 1 31 251 - -
Trme10311g00001 259 Pfam Protein tyrosine and serine/threonine kinase 2 225 IPR001245 GO:0004672|GO:0006468
Trme10311g00001 259 SMART serkin_6 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10311g00001 259 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Trme10311g00001 259 PANTHER OS07G0668900 PROTEIN 1 240 - -
Trme10311g00001 259 PIRSF ILK 1 245 - -
Trme10311g00001 259 ProSiteProfiles Protein kinase domain profile. 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10311g00001 259 FunFam Serine/threonine-protein kinase PBS1 30 245 - -
Trme10311g00001 259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Trme10311g00001 259 SUPERFAMILY Protein kinase-like (PK-like) 2 227 IPR011009 -
Trme10311g00001 259 MobiDBLite consensus disorder prediction 235 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10311g00001 Trme-Chr10311 571 1605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10311g00001 1 232 Glycoside Hydrolase AT3G07070 70.259 6.41e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trme10311g00001 PK_Tyr_Ser-Thr 1.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10311g00001 - - gmx:100499648 494.197