Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103075g00001 ATGATGCCTCAAATGATGGGATTAGCATCCGCTAGAGTTGCATTACCACTCGATCTTGCACAAGACGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGAGACAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTCATCAAAAGTCGTAAA 168 0.4345 MMPQMMGLASARVALPLDLAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRK 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103075g00001 56 SMART cbf3 20 56 IPR001289 GO:0003700|GO:0006355
Trme103075g00001 56 ProSitePatterns NF-YA/HAP2 subunit signature. 26 46 IPR018362 GO:0003677|GO:0016602
Trme103075g00001 56 Gene3D - 21 56 - -
Trme103075g00001 56 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 56 IPR001289 GO:0003700|GO:0006355
Trme103075g00001 56 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 24 56 IPR001289 GO:0003700|GO:0006355
Trme103075g00001 56 ProSiteProfiles NF-YA/HAP2 family profile. 21 56 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103075g00001 Trme-Chr103075 443 610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103075g00001 4 56 CCAAT-HAP2 Transcription Factor Family AT1G54160 69.811 1.43e-19 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme103075g00001 CBFB_NFYA 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103075g00001 K08064 - gmx:100777544 104.76