Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme103027g00001 ATGATTTACAGCAAGTTGGTGGTAGGAGTGCTAAGCCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGGACTGAACTCTCAGGATCTTAGAGATGCCTTTGCTGAACAGCCAGGCATATTGGGTGCCAAAGTCATCTATGAGAAGGACAATGGAAGATCTCGAGGTTTCGGATTTGTCACTTTTGAAACTGCAGAGGATTCACAGGCTGCTTTGAGCGCTATGAACGGTGTGGAGGTTCAAGGTCGGCCATTGCGATTGAATTTGGCATCAGATAGAACATCATCGTCTCCTCGTCCCTCCTCCTCC 309 0.4822 MIYSKLVVGVLSPHKIYAGNLGWGLNSQDLRDAFAEQPGILGAKVIYEKDNGRSRGFGFVTFETAEDSQAALSAMNGVEVQGRPLRLNLASDRTSSSPRPSSS 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme103027g00001 103 SUPERFAMILY RNA-binding domain, RBD 12 101 IPR035979 GO:0003676
Trme103027g00001 103 PANTHER OS02G0815200 PROTEIN 11 93 - -
Trme103027g00001 103 Gene3D - 10 101 IPR012677 -
Trme103027g00001 103 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Trme103027g00001 103 SMART rrm1_1 15 88 IPR000504 GO:0003723
Trme103027g00001 103 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Trme103027g00001 103 CDD RRM2_NsCP33_like 15 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme103027g00001 Trme-Chr103027 1 498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme103027g00001 16 93 Eukaryotic Initiation Factors Gene Family AT3G16380 38.462 1.10e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme103027g00001 - - psat:127125560 147.902