Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102983g00001 ATTTACACACTTTTGAATGTGTTAGAATTCAATAGCACAAGGAAGCGAATGTCAGTGATAGTGAAAGATGAAGAAGGGAGAATTTTGTTGTTGTGTAAAGGTGCAGACGTTGTCATGTTTGAAAGACTTGCCAAGGATGGGAAGGAGTATGAAGAGAAAACATTTGAAGATGTGCATGAATATGCTGACGCAGGTTTAAGGACACTGATATTGGCTTACCGTGAACTTGACGAAGAGCAATACAAGGAGTTTGATAATGAATTTTCCCAAGCAAAAATCTCAATTACA 288 0.375 IYTLLNVLEFNSTRKRMSVIVKDEEGRILLLCKGADVVMFERLAKDGKEYEEKTFEDVHEYADAGLRTLILAYRELDEEQYKEFDNEFSQAKISIT 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102983g00001 96 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 2 82 IPR023299 GO:0000166
Trme102983g00001 96 Gene3D - 1 94 IPR023299 GO:0000166
Trme102983g00001 96 Pfam Cation transport ATPase (P-type) 4 42 - -
Trme102983g00001 96 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102983g00001 Trme-Chr102983 294 681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102983g00001 1 96 Primary Pumps ATPases AT1G13210 72.917 5.58e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102983g00001 K01530 - gmx:100785037 162.155