Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102979g00001 TTAGGTGAAAGTAATAGAGTGATTAAGTGTGGAGGTAGAGTTTTTGCAGCAGAACAAGATCCTGATGTAAAAAGAATTTGGATGCCTGAAGGTGATTGCCCTGGATTAGCTATGTCAAGAGCCTTTGGAGATTTTTGCCTAAAAGATTATGGCCTCTCCTCAGTTCCTGATTTATCTTATAGAAAACTTACCAAGCAAGATGAATTTATTGTTTTGGCCTCTGATGGGATATGGAATGTGCTATCAAATGAAGATGTAATTAACGAAGTTGCATCAGCACCAAAGAGATCATTAGCAGCCAAATTGTTAGTCAAACGTGCAGTTAAAGCTTGGAAAAACAAGTATCCATTTTACTATGTTGATGATTGTTCAGCCATATGTTTGTTCTTGAATGATGAGCAAGTTAATGTGTAA 414 0.3647 LGESNRVIKCGGRVFAAEQDPDVKRIWMPEGDCPGLAMSRAFGDFCLKDYGLSSVPDLSYRKLTKQDEFIVLASDGIWNVLSNEDVINEVASAPKRSLAAKLLVKRAVKAWKNKYPFYYVDDCSAICLFLNDEQVNV 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102979g00001 137 CDD PP2Cc 3 130 IPR001932 -
Trme102979g00001 137 PANTHER PROTEIN PHOSPHATASE 3 128 IPR015655 GO:0004722|GO:0006470
Trme102979g00001 137 ProSiteProfiles PPM-type phosphatase domain profile. 1 130 IPR001932 -
Trme102979g00001 137 Pfam Protein phosphatase 2C 3 108 IPR001932 -
Trme102979g00001 137 SUPERFAMILY PP2C-like 3 132 IPR036457 -
Trme102979g00001 137 Gene3D - 2 133 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102979g00001 Trme-Chr102979 2 628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102979g00001 2 135 PP2C-type Phosphatase Gene Family AT1G79630 61.194 2.11e-59 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102979g00001 - - tpra:123922009 273.863