Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10293g00001 ATGGCAGATAGTCCAGTATCATTTTTATTGGACAGGTTGACTTGGTTACTTCAAGAAGAAGTAAATCTACAAAGAGGCGTCCGTGAAGATGTTCAATACATCAAAGATGAACTCGAACGCCACAAAGCTATCTTAATGGTAGCTGATTCATTGGAAGACAAAGATCCTGAACTCAAAGTATGGGTTAAAAGGGTAAGAGATATTGCTCATGACATGGAAGATGCTATAGATGAATACAATCTCCGCCTTGTCAATCATCGACAAGGTAACAACAATTCTTCTTTTTATAAGATTCTTTTCGCCATTAAGACGATGAAAGGTAGACGCAGAATAGCTTTGAATATTCAAGGAATTAAATCAAAAGTTGAAGTTATCTCGCAAAGACGTCCAATCATACCTGATGTATCTTCAAGCTCAAGTCAAAGGCCGGTTTCAACAAGGCTTGATAGTCAAGGTGATGCCCTTTTGTTAGAAGAAGCTGATTTAGTTGGTATTGAAGAGCCAAAGAAGCAACTTACTGATTTGCTTTTCAAAGATGAATCAAATAGAGCTGTGATTTCAATTTATGGTATGGGAGGTTTAGGGAAAACAACCTTAGCCAAACAAGTCTATGATGATCTAAAAATCAAGAAACGTTTCAGGATTCATGCTTGGGTTAATCTTTCTCAGTCTTTCAAAATGGAAGAGCTGTTGAAGGATCTTGTTCAACAGCTTTATAGTGTTATTGGTAAACCAGTTCCAGAAGCAGTTGGAATGATGAAAATTGAAAAGGTGAAAGAGTTGATCAAGAATTTGCTTCAACGAAGTAGGTATCTAATTGTGCTTGATGATGTGTGGAATGTGAATGTTTGGGATGCTGTGAAGCATGCTTTGCCTAATAACAACCGCGGAAGTAGAGTTATGCTTACCACTCGCAAGAAAGATATAGCTTTGTATTCTTGTGCTGAATTAGGTAAGGATTTTCACCTTGAATTCTTACCTGAGCAAGAAGCTTGGTCACTTTTTTGTAGGAAGACATTTCAAGGTAGTAATAACTCATGTCCTCCTCATCTTGAAGAGGTTTGTAGGAAGATATTGAAATTGTGTGGAGGGCTGCCACTAGCAATTGTGGCAATCAGTGGTGCTTTGGCTACAAGAGAAAGATCAAACATAGAAG 1156 0.378 MADSPVSFLLDRLTWLLQEEVNLQRGVREDVQYIKDELERHKAILMVADSLEDKDPELKVWVKRVRDIAHDMEDAIDEYNLRLVNHRQGNNNSSFYKILFAIKTMKGRRRIALNIQGIKSKVEVISQRRPIIPDVSSSSSQRPVSTRLDSQGDALLLEEADLVGIEEPKKQLTDLLFKDESNRAVISIYGMGGLGKTTLAKQVYDDLKIKKRFRIHAWVNLSQSFKMEELLKDLVQQLYSVIGKPVPEAVGMMKIEKVKELIKNLLQRSRYLIVLDDVWNVNVWDAVKHALPNNNRGSRVMLTTRKKDIALYSCAELGKDFHLEFLPEQEAWSLFCRKTFQGSNNSCPPHLEEVCRKILKLCGGLPLAIVAISGALATRERSNIE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10293g00001 385 CDD RX-CC_like 2 126 IPR038005 -
Trme10293g00001 385 Gene3D - 325 384 IPR042197 -
Trme10293g00001 385 Gene3D - 151 315 IPR027417 -
Trme10293g00001 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 380 IPR027417 -
Trme10293g00001 385 PANTHER DISEASE RESISTANCE PROTEIN RP 33 379 IPR044974 GO:0006952
Trme10293g00001 385 Pfam NB-ARC domain 166 380 IPR002182 GO:0043531
Trme10293g00001 385 FunFam Probable disease resistance protein At1g61300 151 317 - -
Trme10293g00001 385 Gene3D - 5 112 - -
Trme10293g00001 385 Pfam Rx N-terminal domain 6 93 IPR041118 -
Trme10293g00001 385 PRINTS Disease resistance protein signature 185 200 - -
Trme10293g00001 385 PRINTS Disease resistance protein signature 362 376 - -
Trme10293g00001 385 PRINTS Disease resistance protein signature 265 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10293g00001 Trme-Chr10293 554 1709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10293g00001 163 381 WRKY Transcription Factor Family AT5G45050 23.744 1.90e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10293g00001 K13457 - gmx:100305458 553.903