Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102925g00001 ATGCAATTCAACATTTTTACTATTTTGTTTTACTTTAAAACCGTTCCGTCTCATCCCTATCCTATTGAAAATTCATGTGTGTTACTGTACCATGACTCTAGGGGTCAAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGCAAAGTAAGGCATAAGAATTTAGTTCGTTTAGTAGGATATTGTGCAGAAGGTTCTCGAAGGATGCTTGTTTATGAATATGTTGAAAATGGAAACTTGGAGCAATGGCTGCATGGTAATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAAGATTGCCATTGGAACTGCGAAAGGGTGTGTAATTTAA 342 0.3889 MQFNIFTILFYFKTVPSHPYPIENSCVLLYHDSRGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGSRRMLVYEYVENGNLEQWLHGNVGPVSPLTWDIRMKIAIGTAKGCVI 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102925g00001 113 Gene3D Transferase(Phosphotransferase) domain 1 23 113 - -
Trme102925g00001 113 SUPERFAMILY Protein kinase-like (PK-like) 34 111 IPR011009 -
Trme102925g00001 113 PANTHER OS01G0323000 PROTEIN 32 110 - -
Trme102925g00001 113 Pfam Protein tyrosine and serine/threonine kinase 32 111 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102925g00001 Trme-Chr102925 215 658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102925g00001 35 110 Trihelix Transcription Factor Family AT1G70460 56.579 9.03e-23 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme102925g00001 PK_Tyr_Ser-Thr 1.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102925g00001 - - tpra:123913149 160.614