Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102829g00001 ATGATTATAGTTGGAGTTGATGCTGAGGATAACAACATTGAGTTGCTCCTAAGTGAAGTTAAGGGCAAAGACTTCGCCGAGCTTATTGCTAGTGGAAGAGAAAAGTTGGCTTCAGTTCCTTCTGGTGGTGGTGCTGTTGCAGTTGCTGCTGCACCAGGAGGAGGTGCTGCAGCTGCCGCACCTGCTGCCGAAGCTAAGGAGGAGAAGAAGGTTGAAGAAAAAGAAGAATCCGATGATGATATGGGATTCAGCTTATTTGATTAA 264 0.4621 MIIVGVDAEDNNIELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVAAAPGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102829g00001 87 Hamap 50S ribosomal protein L12 [rpl12]. 1 87 IPR027534 GO:0003735|GO:0005840|GO:0006414
Trme102829g00001 87 MobiDBLite consensus disorder prediction 57 87 - -
Trme102829g00001 87 MobiDBLite consensus disorder prediction 63 77 - -
Trme102829g00001 87 Pfam 60s Acidic ribosomal protein 4 86 - -
Trme102829g00001 87 Gene3D - 2 33 IPR038716 -
Trme102829g00001 87 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 4 87 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102829g00001 Trme-Chr102829 19 376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102829g00001 4 87 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.048 1.55e-17 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102829g00001 K02943 - dcr:108206525 81.6481