Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme102659g00001 ATGAGAGAGAAAGAAGAGAGAGAGGGTGAGCTAGGGCTTGAGAGGGATGGGCGCAAACATGGGTCTAGTTATGCTCATAGGATGGATCAGATCTCTACATCCTTCTTTGTCACAAACTTTCCAGAGGAGTTGGGTTGGGGTGATCTTTGGAAGATATTTGCTAGATTTGGGAGTGTTACTGATGTGTTCATTCCTAAAAAGGTTGACAAATGGGGGAGGAAATTTGGTTTTGTCAAGTTTAAGGAGGTTAGGGATATGGAGGATCTAAGCACGAGGCTGGAGGATGTGTGGTGTGGTAACTTCAAGTTACGAGTTAACCGTGCAAGATTCCGGAAAGGCGATAGCAAGGCAGAGAACAAGAACAGTCAAGAGGAGAACCAGAGGAAGATGGAAGCTAATGATAGGCGTGTGAAGGATGATCTTTCCTTCAAATCCTTGTTGACTAGAGATAAGTCTAATGGGGATGAGGAGGTGGTGTGTGCTAGAACTGGAGAGAGGAGGAAAGCCCGTGTTAATAGCATGGGAGATTTGCAACCTTTGGAGCTGAGTGTTTGTGATAATAC 563 0.4512 MREKEEREGELGLERDGRKHGSSYAHRMDQISTSFFVTNFPEELGWGDLWKIFARFGSVTDVFIPKKVDKWGRKFGFVKFKEVRDMEDLSTRLEDVWCGNFKLRVNRARFRKGDSKAENKNSQEENQRKMEANDRRVKDDLSFKSLLTRDKSNGDEEVVCARTGERRKARVNSMGDLQPLELSVCDNT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme102659g00001 188 MobiDBLite consensus disorder prediction 1 21 - -
Trme102659g00001 188 SMART rrm1_1 34 106 IPR000504 GO:0003723
Trme102659g00001 188 SUPERFAMILY RNA-binding domain, RBD 32 128 IPR035979 GO:0003676
Trme102659g00001 188 MobiDBLite consensus disorder prediction 112 134 - -
Trme102659g00001 188 Gene3D - 26 139 IPR012677 -
Trme102659g00001 188 CDD RRM_SF 36 106 - -
Trme102659g00001 188 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 33 167 - -
Trme102659g00001 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 88 IPR000504 GO:0003723
Trme102659g00001 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme102659g00001 Trme-Chr102659 120 682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme102659g00001 33 158 Eukaryotic Initiation Factors Gene Family AT1G22760 25.397 7.56e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme102659g00001 - K13126 pvu:PHAVU_001G152700g 91.6633